 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Sme2.5_01420.1_g00008.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
G2-like |
| Protein Properties |
Length: 408aa MW: 45075.8 Da PI: 5.6025 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_01420.1_g00008.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 76.7 | 3.1e-24 | 252 | 299 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr+rWtpe He Fveav kAtPk +l+lm+v+gLt++hvkSHLQkYR+
Sme2.5_01420.1_g00008.1 252 KPRMRWTPEVHEVFVEAV-------KATPKGVLKLMNVEGLTIYHVKSHLQKYRT 299
79***************9.......69***************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 408 aa
Download sequence Send
to blast |
MNMRRALCIQ RSCEAQHSKM GVCGAMSTSL SILPSLEEKY LKLPDSLDML TEKEQTTNLM 60
SSRAIPSAST SGTVGHLLSS SCGPHEDFHF CPTSSQENRP CNYPFISSKA SAATCQSSLS 120
SIHSTSLDNY PMENSNDSWG KDAYHDSIDF STNVPVQNDQ VESLAVETAD DQVKSSDWQD 180
WADQLINDDG VLDSSWSDIL VDIKPPETKF LGASEVLAFQ SDTLPPPLPA VGASSGQSCP 240
VGSPLSTTAL AKPRMRWTPE VHEVFVEAVK ATPKGVLKLM NVEGLTIYHV KSHLQKYRTA 300
RYKPEPSEGT PEKKMTSVTE MPSLDLKMTM GITEALRMQM EVQKQLHEQL EIQRKLQLRI 360
EEQGIYLEMM FEKTKGIGKD LKVSSSSRTD EHPSPSNKTK HSSPNDKS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4k_A | 1e-23 | 251 | 303 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 1e-23 | 251 | 303 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 1e-23 | 251 | 303 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 1e-23 | 251 | 303 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 1e-23 | 251 | 303 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 1e-23 | 251 | 303 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 1e-23 | 251 | 303 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 1e-23 | 251 | 303 | 1 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC238342 | 0.0 | AC238342.1 Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH170O21, complete sequence. |
