PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01404.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 351aa    MW: 40318.9 Da    PI: 6.4409
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01404.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.91e-171360148
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
          Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                             rg W++eEde+lv+ ++ +G g+W+++++  g+ R++k+c++rw +yl
  Sme2.5_01404.1_g00006.1 13 RGLWSPEEDEKLVRHITTHGHGCWSSVPKLAGLQRCGKSCRLRWINYL 60
                             788*******************************************97 PP
2Myb_DNA-binding52.31.3e-1666109146
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                              rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
  Sme2.5_01404.1_g00006.1  66 RGSFTEQEERTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 109
                              89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-26463IPR009057Homeodomain-like
PROSITE profilePS5129417.854860IPR017930Myb domain
SuperFamilySSF466895.14E-2910107IPR009057Homeodomain-like
SMARTSM007174.4E-131262IPR001005SANT/Myb domain
PfamPF002492.8E-151360IPR001005SANT/Myb domain
CDDcd001673.87E-111660No hitNo description
PROSITE profilePS5129425.97761115IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.8E-2564116IPR009057Homeodomain-like
SMARTSM007171.5E-1565113IPR001005SANT/Myb domain
PfamPF002492.7E-1566109IPR001005SANT/Myb domain
CDDcd001672.26E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGHHCCTKQK VKRGLWSPEE DEKLVRHITT HGHGCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLRRGSFT EQEERTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSC IKKKLIAQGL  120
DPNTHNLLKN KSNNSTKKSN NYTYHQDSTS IFTIDTSTNK EVVSMDLKST LSTLPPNFPH  180
SDNITYNYSP IVPNIEYQIP TFAWSEQGNQ SSVTTTLQSH TSDQRNLITT RDSILDFASC  240
SLMENATNIN VSSYINENSM WHGTGLEPTT LNPVNGQVEE MQVRDQQFPI IETKFCDDKE  300
DVYKVINDHD QTVENSFDNN SNFDFEFMNS EFVPCGLYTN DNPMDQLSWN C
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754491e-163HG975449.1 Solanum pennellii chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352616.10.0PREDICTED: myb-related protein 315-like
TrEMBLA0A1U8EBX30.0A0A1U8EBX3_CAPAN; myb-related protein 330-like
STRINGSolyc10g005240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.19e-80myb domain protein 67