PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01395.1_g00007.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 129aa MW: 14916.1 Da PI: 9.221

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01395.1_g00007.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	41.6	1.5e-13	7	54	3	50
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ++n + + ++ R++ i K EL +LCd++v+ +i +++g+l++++ Sme2.5_01395.1_g00007.1 7 SNNRRINPKSYQVRKECIKRKSMELATLCDIKVCTVITGPHGELQTWP 54 566677778999***********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	9.124	1	53	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.32E-14	8	83	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.6E-9	17	53	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MAEQDQSNNR RINPKSYQVR KECIKRKSME LATLCDIKVC TVITGPHGEL QTWPENLAAV 60 KKVLDLYTQN LKPEKKDEGT SKLEPQEEQG EKDILTLVEE KLEAVNKRIR FLENNQNVAD 120 RKGKKPRIQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006349351.1	2e-58	PREDICTED: agamous-like MADS-box protein AGL93
TrEMBL	M1CBP7	6e-57	M1CBP7_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400064083	9e-58	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3723	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39810.1	4e-11	AGAMOUS-like 98