PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01394.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 347aa    MW: 38575.6 Da    PI: 6.1368
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01394.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.42.1e-10147203561
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 
                              kr++r   NR +A+rs +RK  +i eLe+kv++L++e ++L  +l   +    + ++
  Sme2.5_01394.1_g00005.1 147 KRAKRILANRQSASRSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTQFTN 203
                              9*****************************************999877766666555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.7E-16143207IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.737145208IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.6E-8147201No hitNo description
SuperFamilySSF579591.69E-10147198No hitNo description
PfamPF001708.7E-9147195IPR004827Basic-leucine zipper domain
CDDcd147036.50E-22148197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MQDPSNPNSN QTPPFSATFR PSHHRRAHSE VNFRLPEDLD LVSDPFDASA ASFEEIGSED  60
DFFNTYMDIE KLSSGSNPTD VPGFNNAGAG SSGLVADSSD GDRNFTRPRH RHSNSVDNSN  120
LLLSESIEAK KAMAPDKLAE LWTIDPKRAK RILANRQSAS RSKERKARYI TELERKVQTL  180
QTEATTLSAQ LTLFQRDTTQ FTNENTELKL RLQAMAQQAQ LRDALNEALK QEVERLKMAT  240
GEMSSSSDAY NLGMQHIPYN QSAFFSHQPQ SGSSESQNIQ MQQFHSLQDS LLNPHRRLLA  300
GHVQALPDTM LQDPLGRFQG LDIGGRGMHL VKTETPSISA SESSSTL
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-154HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-154HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004240847.10.0transcription factor RF2b
RefseqXP_015080176.10.0transcription factor RF2b
SwissprotO228731e-112BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A3Q7GUZ50.0A0A3Q7GUZ5_SOLLC; Uncharacterized protein
STRINGSolyc06g048630.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34252349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.19e-94bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  3. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  5. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]