PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_01368.1_g00003.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 1104aa MW: 122908 Da PI: 5.7026

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01368.1_g00003.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90.9	9.6e-29	642	693	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl++l++yFs+++kdAA++Lgvc+T+LKriCRq+GI+RWP+Rki+++ Sme2.5_01368.1_g00003.1 642 AEKHVSLSVLQQYFSGSLKDAAQSLGVCPTTLKRICRQHGISRWPSRKINKV 693 5899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	632	713	IPR003035	RWP-RK domain
Pfam	PF02042	1.0E-26	646	693	IPR003035	RWP-RK domain
SuperFamily	SSF54277	5.56E-21	941	1030	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.9E-23	943	1025	No hit	No description
PROSITE profile	PS51745	22.827	946	1028	IPR000270	PB1 domain
SMART	SM00666	2.0E-22	946	1028	IPR000270	PB1 domain
Pfam	PF00564	3.5E-17	946	1027	IPR000270	PB1 domain
CDD	cd06407	1.26E-29	947	1027	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1104 aa Download sequence Send to blast
MMRCGECSCS GGLDHESRCF LCPKRGLDRI LNPLTDSSFT PASEVIESCP LFWGEDSVDS 60 ILQQAHRWGS QILDRYLVLT AKSFLFSHKI WGFLEYCEVP ESGLWASPRC SYTDDTFNNA 120 MEIMNLDTYA GVEQMFASYP AFSPINPMSI NYSPFDEQNT ETFVYEGENL MYQENDDQFR 180 SVDSSKETDK KGENSSKQNY VTDIVENCVI PKSPCQSLAE RMLRALELYK KSSGEGILAQ 240 VWTPMKHGDQ YILSTYEQPF LLDQVLSGYR EVSRKFTFDL EMKPGSCPGL PGRVFSSRIP 300 EWTSNVTYYK EAEYLRVQYA VDHEVRGSIA LPVLEDDGHD TLCRAVLELV TVKEKQNFDL 360 ETSRVCQALQ AVNLRSTTSP RVSSQSLSKN QKAALAEIKD VLRAVCHAHR LPLALTWIPR 420 SCKGGRDDII TADARVLCVE NTACYVSDKE MQGFLHACMG HDLEEGQGIV GKSLQSNHPF 480 FYSDVKEYHI SEYPLVHHAR KFGLNAAVAI RLRSILTGDD DYVLEYFLPL DMEGSNEQQL 540 LLDNLSRTMQ RFCNSLRTLS DAELVGHGGD KCGLQSESVL NLPPIDFSGR SSHQSLLDRT 600 LGLSKAPTDV CDSERAGIET NSFHIQTPSV SRRQTEKKRS AAEKHVSLSV LQQYFSGSLK 660 DAAQSLGVCP TTLKRICRQH GISRWPSRKI NKVNRSLVKI QTVLKSVQGI EGALKFDTAT 720 GSLVAASSIL QDLDSHRSTL FPYKDVSIKN PKFLFQDAVS ALQTSCIDNH DSLVKMEEDL 780 NVDGNLAESN HFSPSSFRVG DKPNSSLSGV RHDSKLAALD GRSPLTAILD TVRCDSSDNV 840 SLDSSHTKGG WRSCGFNSTN LKLDNSGCYF ISRCPDSMGN IDDVEKKMKG SIETDGDDSV 900 MEHNKVSSSG ATDSSNTSRS TMNGSSSCSG SSGEKKNTRI EDGGSPITVK ATYKEDKIRF 960 KFDPSAGCFQ LYEEVAKRFK LQTGTFQLQY LDDEEEWVML VNDADLNECL EILDVLGTRS 1020 VKFLIQDVSC NVGSSGSITG VLEDFEYTLI RIIVEESHLK FCERFLGGSS MKHGFVSSRP 1080 PSSRPVMIRT RQKSLTSDIA LLHM

Sequence ? help Back to Top

Protein Sequence Length: 1104 aa Download sequence Send to blast

MMRCGECSCS GGLDHESRCF LCPKRGLDRI LNPLTDSSFT PASEVIESCP LFWGEDSVDS  60
ILQQAHRWGS QILDRYLVLT AKSFLFSHKI WGFLEYCEVP ESGLWASPRC SYTDDTFNNA  120
MEIMNLDTYA GVEQMFASYP AFSPINPMSI NYSPFDEQNT ETFVYEGENL MYQENDDQFR  180
SVDSSKETDK KGENSSKQNY VTDIVENCVI PKSPCQSLAE RMLRALELYK KSSGEGILAQ  240
VWTPMKHGDQ YILSTYEQPF LLDQVLSGYR EVSRKFTFDL EMKPGSCPGL PGRVFSSRIP  300
EWTSNVTYYK EAEYLRVQYA VDHEVRGSIA LPVLEDDGHD TLCRAVLELV TVKEKQNFDL  360
ETSRVCQALQ AVNLRSTTSP RVSSQSLSKN QKAALAEIKD VLRAVCHAHR LPLALTWIPR  420
SCKGGRDDII TADARVLCVE NTACYVSDKE MQGFLHACMG HDLEEGQGIV GKSLQSNHPF  480
FYSDVKEYHI SEYPLVHHAR KFGLNAAVAI RLRSILTGDD DYVLEYFLPL DMEGSNEQQL  540
LLDNLSRTMQ RFCNSLRTLS DAELVGHGGD KCGLQSESVL NLPPIDFSGR SSHQSLLDRT  600
LGLSKAPTDV CDSERAGIET NSFHIQTPSV SRRQTEKKRS AAEKHVSLSV LQQYFSGSLK  660
DAAQSLGVCP TTLKRICRQH GISRWPSRKI NKVNRSLVKI QTVLKSVQGI EGALKFDTAT  720
GSLVAASSIL QDLDSHRSTL FPYKDVSIKN PKFLFQDAVS ALQTSCIDNH DSLVKMEEDL  780
NVDGNLAESN HFSPSSFRVG DKPNSSLSGV RHDSKLAALD GRSPLTAILD TVRCDSSDNV  840
SLDSSHTKGG WRSCGFNSTN LKLDNSGCYF ISRCPDSMGN IDDVEKKMKG SIETDGDDSV  900
MEHNKVSSSG ATDSSNTSRS TMNGSSSCSG SSGEKKNTRI EDGGSPITVK ATYKEDKIRF  960
KFDPSAGCFQ LYEEVAKRFK LQTGTFQLQY LDDEEEWVML VNDADLNECL EILDVLGTRS  1020
VKFLIQDVSC NVGSSGSITG VLEDFEYTLI RIIVEESHLK FCERFLGGSS MKHGFVSSRP  1080
PSSRPVMIRT RQKSLTSDIA LLHM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006352200.1	0.0	PREDICTED: protein NLP9-like
TrEMBL	M1A5B3	0.0	M1A5B3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400015041	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3981	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein