PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01363.1_g00001.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family AP2
Protein Properties Length: 729aa    MW: 81258.4 Da    PI: 9.5956
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01363.1_g00001.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.31.2e-10151197555
                      AP2   5 GVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                              G+r+ k +gr++A I d    + ++k+++lg+f+t eeA +a+   + ++e+
  Sme2.5_01363.1_g00001.1 151 GIRRQK-NGRYAAVITD----KiRHKKVWLGTFDTIEEASQAYFSKKSEFEN 197
                              999887.8*********....4345******************988888776 PP
2AP237.94.6e-12321367454
                      AP2   4 kGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                               GVr+ + +gr++AeIrd       r k+++lg+f taeeA +a+   + ++e
  Sme2.5_01363.1_g00001.1 321 VGVRRQH-NGRYAAEIRDrI-----RlKKVWLGTFATAEEASQAYLSKKSEFE 367
                              6***888.8*********33.....58******************88776665 PP
3AP235.72.1e-11455499553
                      AP2   5 GVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                              G+r++k +gr++A I dp +   +k+++lg+f+t eeA +a+   + ++
  Sme2.5_01363.1_g00001.1 455 GIRRRK-SGRYAAVITDPIK---NKKVWLGTFDTIEEASQAYFSKKSEF 499
                              9**999.7*********744...4******************8776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045258.8E-1938107IPR007612LURP1-related protein domain
SuperFamilySSF545185.49E-1743176IPR025659Tubby C-terminal-like domain
PROSITE profilePS5103211.799148205IPR001471AP2/ERF domain
PfamPF008479.2E-7150198IPR001471AP2/ERF domain
CDDcd000183.19E-11151188No hitNo description
Gene3DG3DSA:3.30.730.101.3E-10151196IPR001471AP2/ERF domain
SMARTSM003807.6E-4151209IPR001471AP2/ERF domain
PROSITE profilePS5103213.92319378IPR001471AP2/ERF domain
SMARTSM003802.4E-6319389IPR001471AP2/ERF domain
CDDcd000181.78E-13321359No hitNo description
PfamPF008478.4E-7321368IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-9321364IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-13322359IPR001471AP2/ERF domain
PROSITE profilePS5103212.879452511IPR001471AP2/ERF domain
PfamPF008472.1E-6454500IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-11454498IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.2E-12455492IPR001471AP2/ERF domain
CDDcd000182.98E-12455492No hitNo description
SMARTSM003809.3E-5455513IPR001471AP2/ERF domain
PROSITE profilePS5103211.008540602IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-7542589IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.4E-9548588IPR001471AP2/ERF domain
SMARTSM003800.018548595IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MLLFLKSISS RSLNYQDHHL EDFKNNNNSC KELSITSTSS SSSSSSCISL TVWRKSLIFS  60
CKGFTVIGSD GNLVYRVDNY SGSRSQTILM DASGKPILTI CRHKVKSLLL LFQHNNMDIK  120
EGFSSKKLVV ETDEWNTSTV CNPKAKISLI GIRRQKNGRY AAVITDKIRH KKVWLGTFDT  180
IEEASQAYFS KKSEFENEKL RLQGNKKSKR IRALTCIYNS EKSAELVSVK QGYENVNGEI  240
FQTESGGGSE IDVLISSSSN GGTEERIDSR EIGAAEEAFR FAKWGSRVFN SGLMGSVCGT  300
KSSDECNKTK SCDLNAKIRL VGVRRQHNGR YAAEIRDRIR LKKVWLGTFA TAEEASQAYL  360
SKKSEFEKLK QGNKENKPKK NCDQIQQPES SSIVAPLDTT ASESGRAKRI DSQGGESGSS  420
KATSCLMTNV HSVESSGECN ITTSCDPKVG RSLIGIRRRK SGRYAAVITD PIKNKKVWLG  480
TFDTIEEASQ AYFSKKSEFE KFRQANKENK VKKKCDQIQQ PESLSVVTSE RIDSHKTTTR  540
LIGAQKSKTA GKYQSGITNP ITKRKIWLGT FASAEEASHA YQSKKLEFQK LVEAKQQHCT  600
YKRRKSEKLV NKQGLEPLRP ESASGSPDVD TSFSNSGIAE EAFHAYQPKK FNLQSSKNVE  660
LQSNIPTDSS AREKQEGQED DEDLWTGEWI QLPGDDREVM FSLKLGLPII DNYGSLLGEF  720
SSLDDLSIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1200208RLQGNKKSK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027775191.10.0uncharacterized protein LOC114078472
TrEMBLM1AW580.0M1AW58_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000317440.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.24e-14ERF family protein