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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01358.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 154aa MW: 17280.8 Da PI: 10.2147 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 29.8 | 7.6e-10 | 10 | 58 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ri n+ r v fsk r+ ++K e + ++ ++a ++fs+ g+ly+y Sme2.5_01358.1_g00004.1 10 ERITNEKSRMVAFSKKRKALFKRNEKVECQTGSRIASVVFSPAGRLYTY 58 69**********************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.5E-6 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 16.764 | 2 | 62 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 3.17E-12 | 3 | 59 | No hit | No description |
SuperFamily | SSF55455 | 3.92E-12 | 3 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-9 | 4 | 24 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-12 | 11 | 58 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-9 | 24 | 39 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-9 | 39 | 60 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MATRKKIPIE RITNEKSRMV AFSKKRKALF KRNEKVECQT GSRIASVVFS PAGRLYTYGD 60 VDFAIQKHFC STKLSTSRMK SHQSNSDVVV TGGASGSRSS PTLERNSLRK WVEGIDVEGC 120 QDLNQLLLLK EQLEGTREKM GSIEDAQLFE AMFA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016582225.1 | 8e-57 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2G2YZ40 | 2e-56 | A0A2G2YZ40_CAPAN; Uncharacterized protein | ||||
STRING | PGSC0003DMT400057855 | 8e-50 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 4e-10 | M-type_MADS family protein |