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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_01314.1_g00005.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
HSF |
Protein Properties |
Length: 421aa MW: 48362.8 Da PI: 5.2291 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_01314.1_g00005.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 110.3 | 1.4e-34 | 20 | 110 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87
Fl k+ye+++d+ ++ ++sws+ng+sfvv+++ efa+++LpkyFkh+nf+SF+RQLn+YgF+kv+ e+ weF++++F
Sme2.5_01314.1_g00005.1 20 FLLKTYELVDDPYTNPVVSWSHNGRSFVVWNPPEFARDLLPKYFKHNNFSSFIRQLNTYGFRKVDPEQ---------WEFANEEFL 96
9***************************************************************9998.........********* PP
XXXXXXXXXXXXXX CS
HSF_DNA-bind 88 kgkkellekikrkk 101
+g+++ll++i r+k
Sme2.5_01314.1_g00005.1 97 RGQRHLLKNIYRRK 110
************98 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 421 aa
Download sequence Send
to blast |
MVSMAMENCN GGSSSSPAPF LLKTYELVDD PYTNPVVSWS HNGRSFVVWN PPEFARDLLP 60 KYFKHNNFSS FIRQLNTYGF RKVDPEQWEF ANEEFLRGQR HLLKNIYRRK PIHSHSATGQ 120 SVAPLTDSER QEYEDEIERL KKENSLLQTS VENQEKFNYE YEFGIKSMEQ RLQNVAHRQG 180 KLISLLAQLL QRPEFSSDLI QCANNNSKKR RLLVSNYLIE EENTTTNSVV APKLDLEMVK 240 KLDSSINFWE RFLYGIRINP IEDQMCDYEH VQSLPVQTAI HEMDTSSDDS GKRNSPIDHS 300 RDIQSSSGFG GGPSSPVISS IYVNLECQLK PSDQSDRIES KTTKVSESVS NSGNDVFWQQ 360 FLTETPGCTE PQEVENKEFN EVTCDIRLTE NHRYWWNHGV NVENLAERMG HLSSPATGQL 420 S
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975446 | 1e-111 | HG975446.1 Solanum pennellii chromosome ch07, complete genome. |