PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01278.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 396aa MW: 44513.8 Da PI: 4.639 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51 | 1.8e-16 | 14 | 52 | 7 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 snr +s+R++g+lKKA+ELSvLCd+++ + +fs++gk Sme2.5_01278.1_g00003.1 14 SNRIGVYSRRKKGLLKKANELSVLCDIDIFLAMFSPSGK 52 788889*******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.3E-18 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.647 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.16E-16 | 2 | 83 | No hit | No description |
SuperFamily | SSF55455 | 1.01E-19 | 3 | 93 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.8E-15 | 14 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-9 | 22 | 37 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.4E-9 | 37 | 58 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MGRAKLKLHK LDGSNRIGVY SRRKKGLLKK ANELSVLCDI DIFLAMFSPS GKPSVYKSES 60 SSFEDMITKI AEVNPEERAK RKMECLETIK KACKKSDHDV NIGEQLSPGD LTTEDINFLS 120 HSLRIRLSDI EGRLRLWKNL DKIDNIQQLR KLEDSISKSL NEIAKHKYGM SSLIFCNGED 180 IQPSSVQHGM DLPSNFDARK EPNPCSLIHG CDSENTDAYE DLNSFGSSLP SDTGADFQAS 240 SLMQYGINSW QEFYQCSSVH DGNNENMDVY ENLSSYPLGY LEEPSFSFES YTNLVCNKEI 300 EVSKPESKKF IPDEMFLDCE LNQEDIETQF GFTFDVPQVE LMDDQGNIFG CSTKNSSRLP 360 HSDFANIHDS SKPAASGACD NIMLADSLNF LKDPSM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015168687.1 | 0.0 | PREDICTED: uncharacterized protein LOC102601973 | ||||
Refseq | XP_015168688.1 | 0.0 | PREDICTED: uncharacterized protein LOC102601973 | ||||
Refseq | XP_015168689.1 | 0.0 | PREDICTED: uncharacterized protein LOC102601973 | ||||
Refseq | XP_015168690.1 | 0.0 | PREDICTED: uncharacterized protein LOC102601973 | ||||
Refseq | XP_015168691.1 | 0.0 | PREDICTED: uncharacterized protein LOC102601973 | ||||
Refseq | XP_015168692.1 | 0.0 | PREDICTED: uncharacterized protein LOC102601973 | ||||
TrEMBL | A0A0V0IRG1 | 0.0 | A0A0V0IRG1_SOLCH; Putative ovule protein | ||||
STRING | XP_009770375.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13948 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 6e-50 | AGAMOUS-like 30 |