![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_01223.1_g00007.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
GRAS |
Protein Properties |
Length: 580aa MW: 63617.4 Da PI: 4.7646 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_01223.1_g00007.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Sme&pid=Sme2.5_01223.1_g00007.1) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 455.8 | 2.7e-139 | 198 | 568 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86
lv++L++cAeav++++++la+al+ ++ la ++ +m+++a+yf+eALa+r+++ + p+++ e++ +++l++ f+e
Sme2.5_01223.1_g00007.1 198 LVHTLMACAEAVQQENFNLADALVRHIGILAVSQSGAMRKVATYFAEALARRIYK--------IYPQDSIESSYTDVLQM--HFYE 273
689****************************************************........44666654445555544..4*** PP
GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
++P+lkf+h+taNqaIlea+ ++++vH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p++++++ l+++g++La++A+++
Sme2.5_01223.1_g00007.1 274 TCPYLKFAHFTANQAILEAFTNCNKVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDPLQQVGWKLAQLADTI 359
************************************************************************************** PP
GRAS 173 gvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256
gv+fef+ +va++l+dl+ L+++p Ea+aVn+v++lhrll++++++e+ vL+ +k+++Pk+v++veqea+hn++ F +r
Sme2.5_01223.1_g00007.1 360 GVEFEFRGFVANSLADLDAAILDIRPseTEAVAVNSVFELHRLLSRPGAIEK----VLNSIKQMNPKIVTLVEQEANHNAGVFIDR 441
*************************9999***************99999999....****************************** PP
GRAS 257 flealeyysalfdsleaklpres........eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
f eal+yys++fdsle++ +++s +++ ++++++lgr+i+nvvaceg++r+erhetl++Wr r++++GF pv+l+++a
Sme2.5_01223.1_g00007.1 442 FNEALHYYSTMFDSLESSSSPTSglaqtpvnNQDLVMSEVYLGRQICNVVACEGSDRVERHETLNQWRVRMSSSGFDPVHLGSNAF 527
***************999555555555557799***************************************************** PP
GRAS 335 kqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
Sme2.5_01223.1_g00007.1 528 KQASMLLALFAgGDGYRVEENDGCLMLGWHTRPLIATSAWQ 568
****************************************6 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009723 | Biological Process | response to ethylene |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
GO:0010187 | Biological Process | negative regulation of seed germination |
GO:0010218 | Biological Process | response to far red light |
GO:0042176 | Biological Process | regulation of protein catabolic process |
GO:0042538 | Biological Process | hyperosmotic salinity response |
GO:2000033 | Biological Process | regulation of seed dormancy process |
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 580 aa
Download sequence Send
to blast |
MKRDRDRERE KTTFHGVSHG GSSGKAKIWE EDEEEQPDAG VDELLAVLGY KVKSSDMAEV 60 AQKLEQLEMA MGTSMEDGIT HLSTDTVHKN PSDLCGWVQS MLSELNPTSI DMANGRENND 120 LVVSGSGSSS TIIDFSQNRT TTISDDDLRA IPGGAVFRDS SDSSNKRQRS SLNTNLLTDS 180 SASRPVVLVD SQETGVRLVH TLMACAEAVQ QENFNLADAL VRHIGILAVS QSGAMRKVAT 240 YFAEALARRI YKIYPQDSIE SSYTDVLQMH FYETCPYLKF AHFTANQAIL EAFTNCNKVH 300 VIDFSLKQGM QWPALMQALA LRPGGPPAFR LTGIGPPQPD NTDPLQQVGW KLAQLADTIG 360 VEFEFRGFVA NSLADLDAAI LDIRPSETEA VAVNSVFELH RLLSRPGAIE KVLNSIKQMN 420 PKIVTLVEQE ANHNAGVFID RFNEALHYYS TMFDSLESSS SPTSGLAQTP VNNQDLVMSE 480 VYLGRQICNV VACEGSDRVE RHETLNQWRV RMSSSGFDPV HLGSNAFKQA SMLLALFAGG 540 DGYRVEENDG CLMLGWHTRP LIATSAWQLT ADSGAVEVAS
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975523 | 0.0 | HG975523.1 Solanum lycopersicum chromosome ch11, complete genome. |