 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_01173.1_g00008.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 380aa MW: 41258 Da PI: 8.0152 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_01173.1_g00008.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 55.3 | 1.1e-17 | 202 | 256 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k
Sme2.5_01173.1_g00008.1 202 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKHLSLRPRQVEVWFQNRRARTK 256
778899***********************************************98 PP
|
| 2 | HD-ZIP_I/II | 125.3 | 2.8e-40 | 202 | 291 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86
+kk+rlskeq++ LEesF+e+++L+p++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke e
Sme2.5_01173.1_g00008.1 202 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKHLSLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELLE 287
69************************************************************************************ PP
HD-ZIP_I/II 87 Lreel 91
Lr +l
Sme2.5_01173.1_g00008.1 288 LR-AL 291
*9.55 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 380 aa
Download sequence Send
to blast |
MKVMELGLSL GDATTSTTNN TTTSSPKSFF LSKKNVTSSC EPEKKKGLGF CMALGINSSS 60
NGRVQQEDEE NNNTSEDTVP VQLDLLPLVP VPLPLSAHNP QSLHWSSDNG SSENGSSGNG 120
GLPAARGFDV NLVPAVGMEE VSSPNSVASS FRMDFGLFKS CVNIMGAGNK RNSESAGGND 180
GGEPERASSR ASDEDENGIN TRKKLRLSKE QSAYLEESFK EHHTLNPKQK LALAKHLSLR 240
PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CETLTEENRR LHKELLELRA LKTSNPFYMQ 300
LPATTLTMCP SCERVASTTT ATSTAAAPPI TAAATTTTTT TSTSDSIPKA IPFLNSRPRF 360
FPFTTTNNNP NHSPHQSAAS
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 200 | 206 | TRKKLRL |
| 2 | 250 | 258 | RRARTKLKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
