PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01173.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 315aa    MW: 33397.7 Da    PI: 9.5882
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01173.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.82.8e-06127148627
                              -SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                              C+ f     C++Gd+C+FaH++
  Sme2.5_01173.1_g00005.1 127 CSKFNTAEGCRFGDKCHFAHSE 148
                              888999899***********95 PP
2zf-CCCH30.84.8e-10283307227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              kt+ C +f++ G C +G++C+FaHgp
  Sme2.5_01173.1_g00005.1 283 KTKMCANFSK-GLCTFGEKCHFAHGP 307
                              89********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF1460837585No hitNo description
Gene3DG3DSA:4.10.1000.107.7E-11120150IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.324121149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7121150IPR000571Zinc finger, CCCH-type
SMARTSM003560.079123148IPR000571Zinc finger, CCCH-type
PfamPF146080.085127146No hitNo description
SuperFamilySSF547916.72E-15186261IPR004088K Homology domain, type 1
SMARTSM003222.6E-12189259IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.103.6E-15190259IPR004088K Homology domain, type 1
PROSITE profilePS5008414.257190254IPR004088K Homology domain, type 1
PfamPF000133.6E-11192256IPR004088K Homology domain, type 1
CDDcd001051.30E-13192254No hitNo description
PROSITE profilePS5010315.751281308IPR000571Zinc finger, CCCH-type
SMARTSM003565.4E-4281307IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-13282313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-8282311IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-6283307IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEFGRKRRGG GAFGSSGAMK KSRDESESFT TGVGSKSKPC TKFFRNVNKE SVGLVQVAKI  60
KGCVSCDLGH STTGCSYGAG CHFLHYVPGY TAMSQLSNMG SNSAPPFERN SASFGDGPGP  120
AVKSKFCSKF NTAEGCRFGD KCHFAHSEME IGKQVRPAYD DFQAKGPVSG YSGYLELSQP  180
GLAATNFGAS ATTTISIDAS LAGNIIGKNG VNSKHISRLT GVKLFIKDHE TDTNKRNVEL  240
QGTFEQINQA SAMVRELISN ISTPTGGLKN AVPFSRGPSG PLKTKMCANF SKGLCTFGEK  300
CHFAHGPSEL QKPLA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006359166.10.0PREDICTED: zinc finger CCCH domain-containing protein 31-like
SwissprotQ7F8R02e-84C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM1A7930.0M1A793_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000161950.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-54C3H family protein