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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_01173.1_g00005.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
C3H |
Protein Properties |
Length: 315aa MW: 33397.7 Da PI: 9.5882 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_01173.1_g00005.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 18.8 | 2.8e-06 | 127 | 148 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27
C+ f C++Gd+C+FaH++
Sme2.5_01173.1_g00005.1 127 CSKFNTAEGCRFGDKCHFAHSE 148
888999899***********95 PP
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2 | zf-CCCH | 30.8 | 4.8e-10 | 283 | 307 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C +f++ G C +G++C+FaHgp
Sme2.5_01173.1_g00005.1 283 KTKMCANFSK-GLCTFGEKCHFAHGP 307
89********.*************96 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
Pfam | PF14608 | 3 | 75 | 85 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 7.7E-11 | 120 | 150 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.324 | 121 | 149 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-7 | 121 | 150 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.079 | 123 | 148 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.085 | 127 | 146 | No hit | No description |
SuperFamily | SSF54791 | 6.72E-15 | 186 | 261 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 2.6E-12 | 189 | 259 | IPR004087 | K Homology domain |
Gene3D | G3DSA:3.30.1370.10 | 3.6E-15 | 190 | 259 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50084 | 14.257 | 190 | 254 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 3.6E-11 | 192 | 256 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 1.30E-13 | 192 | 254 | No hit | No description |
PROSITE profile | PS50103 | 15.751 | 281 | 308 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.4E-4 | 281 | 307 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-13 | 282 | 313 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-8 | 282 | 311 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-6 | 283 | 307 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MEFGRKRRGG GAFGSSGAMK KSRDESESFT TGVGSKSKPC TKFFRNVNKE SVGLVQVAKI 60 KGCVSCDLGH STTGCSYGAG CHFLHYVPGY TAMSQLSNMG SNSAPPFERN SASFGDGPGP 120 AVKSKFCSKF NTAEGCRFGD KCHFAHSEME IGKQVRPAYD DFQAKGPVSG YSGYLELSQP 180 GLAATNFGAS ATTTISIDAS LAGNIIGKNG VNSKHISRLT GVKLFIKDHE TDTNKRNVEL 240 QGTFEQINQA SAMVRELISN ISTPTGGLKN AVPFSRGPSG PLKTKMCANF SKGLCTFGEK 300 CHFAHGPSEL QKPLA
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