PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01159.1_g00009.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

bZIP

Protein Properties

Length: 444aa MW: 48310.1 Da PI: 8.7103

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01159.1_g00009.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	23.1	1.6e-07	88	130	8	50
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 8 rrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 +r +N++A r++ ++Kka+ + Le++v L+a N++L k+l+ Sme2.5_01159.1_g00009.1 88 KRPLSNKVAVRKYSEKKKARAASLEDEVVRLSAINQQLLKRLQ 130 8899***********************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.0E-6	81	148	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.2E-10	85	148	No hit	No description
Pfam	PF07716	1.0E-8	87	130	IPR004827	Basic-leucine zipper domain
CDD	cd14686	5.87E-8	87	140	No hit	No description
SuperFamily	SSF57959	5.98E-5	88	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MDGGELELSS QEVLSSFNFG EIPECSHLNK RFNEILTDVH ACIHAHTCNP PRPDNSHTHT 60 CYHVHTKAVP PTCDDTTAES TAANTGKKRP LSNKVAVRKY SEKKKARAAS LEDEVVRLSA 120 INQQLLKRLQ GQAVLEAEIS RLKCLLVDIQ GRIAGEIGSF SYQKPMGGSD VYQHLVNPDL 180 RGTYVMNPCN LQCHDQGSEE LNGQGLNSCG FEILQCSGSQ GLKEVPGCAL GYNTPTSNAS 240 HGKKTMITGV TSKPVLSGFS NPSSSWAFPS SSEGLNMVPT QSTPSNSPPS EIPTSDTPPS 300 KLVCHRLRRI TREPIEISDD FSSPERAPTS ASPRAPQTSS RKRQDDAALQ QAFFQSKKRK 360 ATPGSSFSQS DLLIHQVRSN VTKRMIPKPP RSSPAPSPKK SSTTTKNPPK SRASSSKEKQ 420 IPQPIPSDDS ETENDRELTS CRPN

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MDGGELELSS QEVLSSFNFG EIPECSHLNK RFNEILTDVH ACIHAHTCNP PRPDNSHTHT  60
CYHVHTKAVP PTCDDTTAES TAANTGKKRP LSNKVAVRKY SEKKKARAAS LEDEVVRLSA  120
INQQLLKRLQ GQAVLEAEIS RLKCLLVDIQ GRIAGEIGSF SYQKPMGGSD VYQHLVNPDL  180
RGTYVMNPCN LQCHDQGSEE LNGQGLNSCG FEILQCSGSQ GLKEVPGCAL GYNTPTSNAS  240
HGKKTMITGV TSKPVLSGFS NPSSSWAFPS SSEGLNMVPT QSTPSNSPPS EIPTSDTPPS  300
KLVCHRLRRI TREPIEISDD FSSPERAPTS ASPRAPQTSS RKRQDDAALQ QAFFQSKKRK  360
ATPGSSFSQS DLLIHQVRSN VTKRMIPKPP RSSPAPSPKK SSTTTKNPPK SRASSSKEKQ  420
IPQPIPSDDS ETENDRELTS CRPN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	340	359	RKRQDDAALQQAFFQSKKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	1e-180	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010327411.1	1e-137	basic leucine zipper 23-like
Swissprot	Q8GTS2	3e-80	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	M1AVA6	1e-140	M1AVA6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400031184	1e-140	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2989	24	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	3e-79	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]