PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01139.1_g00009.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 533aa    MW: 59564 Da    PI: 8.3054
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01139.1_g00009.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.2e-11433459127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +kt++C+ +  tG+C++Gd C+FaHg+
  Sme2.5_01139.1_g00009.1 433 WKTKICMKWKTTGQCHFGDHCHFAHGQ 459
                              8************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF530981.1E-5123198IPR012337Ribonuclease H-like domain
SMARTSM003560.022357384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112357385IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-6358386IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-6359384IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-10429464IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-15429463IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558432460IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-5432459IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9433459IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MGDASAAPPI IPGSTVDTPP TPVTLDRAYQ AMLQEEKSRD IARGKVVQEE THAFALRADQ  60
PTPRTERPDK GKLQCTHCKQ KDHEVGNCFK LHGYPKWGAT YHVNLLKFDA KLIDCMTGKN  120
DVHSWIIDSG ATHHVTGNGA YLINPKKADH WTHILNVARV LIFQANLPLR FWGECILGAV  180
YLINRTPSGL LENKTPYEVL CGKMGAVYLI NRTPSGLLEN KTPYEVLCGK TPTYDEIRVF  240
GCLCFAHNQR AKGNKFAPRG CSSKGDASAA PPIIPSSNVD TLVGDNGVET SAAEQSTMTG  300
HGSTMDGGST ATDQIIARME NSVLFAHGID DLRDPPPNWQ DLVRVKDKEL NDNQGKMNRM  360
KICKMFYDGE ECPYGYKCNF LHERPQISKT NMPRHMKSCA ITIETTGNIS DPKKLKTNKH  420
ENDVDRIKRP IYWKTKICMK WKTTGQCHFG DHCHFAHGQS ELQVPMHINS IPTTPRPSSI  480
SLAANTLMNV SIEDEKDEKK ILKWKPSKKI AEIYGDWIDG YVVPHRLFSN IES
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.14e-29C3H family protein