PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01139.1_g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C3H | ||||||||
Protein Properties | Length: 533aa MW: 59564 Da PI: 8.3054 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.9 | 1.2e-11 | 433 | 459 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt++C+ + tG+C++Gd C+FaHg+ Sme2.5_01139.1_g00009.1 433 WKTKICMKWKTTGQCHFGDHCHFAHGQ 459 8************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF53098 | 1.1E-5 | 123 | 198 | IPR012337 | Ribonuclease H-like domain |
SMART | SM00356 | 0.022 | 357 | 384 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.112 | 357 | 385 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.32E-6 | 358 | 386 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.6E-6 | 359 | 384 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.96E-10 | 429 | 464 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-15 | 429 | 463 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.558 | 432 | 460 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.2E-5 | 432 | 459 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-9 | 433 | 459 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MGDASAAPPI IPGSTVDTPP TPVTLDRAYQ AMLQEEKSRD IARGKVVQEE THAFALRADQ 60 PTPRTERPDK GKLQCTHCKQ KDHEVGNCFK LHGYPKWGAT YHVNLLKFDA KLIDCMTGKN 120 DVHSWIIDSG ATHHVTGNGA YLINPKKADH WTHILNVARV LIFQANLPLR FWGECILGAV 180 YLINRTPSGL LENKTPYEVL CGKMGAVYLI NRTPSGLLEN KTPYEVLCGK TPTYDEIRVF 240 GCLCFAHNQR AKGNKFAPRG CSSKGDASAA PPIIPSSNVD TLVGDNGVET SAAEQSTMTG 300 HGSTMDGGST ATDQIIARME NSVLFAHGID DLRDPPPNWQ DLVRVKDKEL NDNQGKMNRM 360 KICKMFYDGE ECPYGYKCNF LHERPQISKT NMPRHMKSCA ITIETTGNIS DPKKLKTNKH 420 ENDVDRIKRP IYWKTKICMK WKTTGQCHFG DHCHFAHGQS ELQVPMHINS IPTTPRPSSI 480 SLAANTLMNV SIEDEKDEKK ILKWKPSKKI AEIYGDWIDG YVVPHRLFSN IES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6553 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19360.1 | 4e-29 | C3H family protein |