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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_01130.1_g00004.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
Whirly |
| Protein Properties |
Length: 281aa MW: 31077.1 Da PI: 9.748 |
| Description |
Whirly family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_01130.1_g00004.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Whirly | 216.9 | 1.8e-67 | 104 | 242 | 1 | 139 |
Whirly 1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsn 86
s+yk+kaal+v+++ p+f+ ldsg++kl+r+G ++l++a+a+++r+ydW++kq+f+ls+te++++++l++k+sceffhdp ++ s+
Sme2.5_01130.1_g00004.1 104 SIYKGKAALTVEPRSPEFSPLDSGAFKLSRDGMVMLQFAPAAGVRQYDWSRKQVFSLSVTEIGSIISLGAKDSCEFFHDPNKGRSD 189
7************************************************************************************* PP
Whirly 87 eGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
eG+vrk+lkvePlpdGsG+f+nlsv+n+l++ +e++++Pv+kaefavl s+++
Sme2.5_01130.1_g00004.1 190 EGRVRKVLKVEPLPDGSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFN 242
*************************************************9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006281 | Biological Process | DNA repair |
| GO:0032211 | Biological Process | negative regulation of telomere maintenance via telomerase |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0045910 | Biological Process | negative regulation of DNA recombination |
| GO:0009508 | Cellular Component | plastid chromosome |
| GO:0009570 | Cellular Component | chloroplast stroma |
| GO:0003697 | Molecular Function | single-stranded DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0042162 | Molecular Function | telomeric DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MSNFSLSPSP TASFKLNLQN PTKTSPYHYQ PLSFSSSIST TKSFYALPHT AALPRKLSLT 60
CRHSDYFEPQ QQQQQPQAAI LGLFLNTNKS SLGASTPKVF VGYSIYKGKA ALTVEPRSPE 120
FSPLDSGAFK LSRDGMVMLQ FAPAAGVRQY DWSRKQVFSL SVTEIGSIIS LGAKDSCEFF 180
HDPNKGRSDE GRVRKVLKVE PLPDGSGHFF NLSVQNKLIN LDENIYIPVT KAEFAVLVSA 240
FNFVVPYLLG WHTAANSFKP EDASRSNNAN PRSGAELEWN R
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1l3a_A | 1e-136 | 62 | 280 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_B | 1e-136 | 62 | 280 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_C | 1e-136 | 62 | 280 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
| 1l3a_D | 1e-136 | 62 | 280 | 12 | 219 | p24: plant transcriptional regulator PBF-2 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Single-stranded DNA-binding protein that acts as a transcriptional activator of the pathogenesis-related gene PR-10a. Upon elicitation, binds a 30bp promoter sequence known as elicitor element response (ERE) and is required for PR-10a expression. {ECO:0000269|PubMed:10948264, ECO:0000269|PubMed:12080340, ECO:0000269|PubMed:14960277}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF233342 | 0.0 | AF233342.1 Solanum tuberosum DNA-binding protein p24 mRNA, complete cds. |
