PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01110.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 544aa MW: 60725.9 Da PI: 4.3624 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.6 | 1e-52 | 10 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 ++pGfrFhPtdeelv +yL++k+ gk+l++ ++i+e+diykvePwdLp +++k+++ ewyfFs d+k+ +g ++nrat++gyWk Sme2.5_01110.1_g00003.1 10 MAPGFRFHPTDEELVRYYLRRKIIGKPLRF-DAISEIDIYKVEPWDLPgmSRLKTRDLEWYFFSVLDRKHGNGAKTNRATERGYWK 94 579*************************99.99***************6347788888**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +tgkd++v++ k ++vg+kktLvf++grapkge+t+Wvmhey+l Sme2.5_01110.1_g00003.1 95 TTGKDRAVYH-KAKVVGMKKTLVFHSGRAPKGERTNWVMHEYKL 137 **********.9999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 58.234 | 10 | 160 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.03E-61 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-28 | 12 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009962 | Biological Process | regulation of flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 544 aa Download sequence Send to blast |
MESKGSKKLM APGFRFHPTD EELVRYYLRR KIIGKPLRFD AISEIDIYKV EPWDLPGMSR 60 LKTRDLEWYF FSVLDRKHGN GAKTNRATER GYWKTTGKDR AVYHKAKVVG MKKTLVFHSG 120 RAPKGERTNW VMHEYKLIDE ELDKAGIVQD ALVLCRVFQK SGPGPKNGEK YGAPFVEEEW 180 EEDELEIVPK EEAAEEVEFG DDIFLDGHDL EQILGTDTPV DGAPLPLNCY SEGNASNSGE 240 TSNSFEEAQN WLQQPDEQES FDPSIQQNAN ANPVKHEFMS EPSDSVNAED VDYLLDEPIV 300 TAADNLQFND GAFLEASDLS RPIEVDTSGF DMLEEYLTFF DADEDFQSMG FNSPMMIGGD 360 DHVYDLASLE EKNIGEVTDQ PIAPSEEPED LKKNVASSSK LEPSKFGSDY KYPFMKQASC 420 MLGGIPAPPA FASEFPSKNA AFRINSSSEA SSSSIHVTGL IQITNMTVSG DGMDRLVGKH 480 GNYNVILSLG LSQLGDSSAL LESAVSILPG KTISIVSWCW FYYIFLWVLI LSTTFKIGTF 540 IRAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-44 | 10 | 166 | 20 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00059 | PBM | Transfer from AT5G04410 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-176 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006345843.1 | 0.0 | PREDICTED: NAC domain-containing protein 78-like | ||||
TrEMBL | M1C572 | 0.0 | M1C572_SOLTU; Uncharacterized protein | ||||
STRING | Solyc05g055470.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3141 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10500.1 | 1e-125 | NAC domain containing protein 53 |