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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01098.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 385aa MW: 42369.6 Da PI: 4.4632 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 116 | 165 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r ++ +g+W+AeIrdp + r+++g+f taeeAa+a++a +++++g Sme2.5_01098.1_g00004.1 116 QYRGIRKRP-WGKWAAEIRDPQ----KgVRVWIGTFNTAEEAARAYDAEARRIRG 165 69*******.**********94....35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.7E-33 | 116 | 179 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.31E-21 | 116 | 175 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.6E-31 | 116 | 175 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.90E-31 | 116 | 174 | No hit | No description |
PROSITE profile | PS51032 | 23.736 | 116 | 173 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 117 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.7E-11 | 117 | 165 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-11 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MCGGAIISGW IPPPRSSQRL TADLLWDCSD LENKKKKKKK NASNYHSKPL RSEVVDFEAD 60 FQDFKDEEEE DYSLDINTFA FSASELSGTS AGSKSLNSVD SNKEVEKSSK RQRKNQYRGI 120 RKRPWGKWAA EIRDPQKGVR VWIGTFNTAE EAARAYDAEA RRIRGNKAKV NFPDEAPIPA 180 SKQAGKVNPR KVLSDESSNP VLSNTMFMNN LNDGCCDNLG FFEEKTTTLY GYEALCATPV 240 NTGPSSYAAP ATAGVYFNSD QGSNSFDPSD FVWGETCSRT PDISSVLSAA IECDEGQFVE 300 GADPEEKLKS CSNNLVPDDG NTSHRPPEEF SAFESEVKLF QTPYSEGNLD LSVDAFLNAD 360 ATQGGENAMD LWSFDELSSI MGGVF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-21 | 116 | 173 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 39 | KKKKKKK |
2 | 109 | 123 | KRQRKNQYRGIRKRP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013435 | 0.0 | BT013435.1 Lycopersicon esculentum clone 132076R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006362095.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_006362096.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | M1CTE3 | 0.0 | M1CTE3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400074248 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 6e-58 | related to AP2 12 |