PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01085.1_g00003.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 737aa    MW: 81359 Da    PI: 8.4904
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01085.1_g00003.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.12.1e-17658692135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              Cs+Cg  kTp+WR gp g ktLCnaCG++y++ +l
  Sme2.5_01085.1_g00003.1 658 CSHCGIQKTPQWRAGPMGAKTLCNACGVRYKSGRL 692
                              *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139766.4E-7258286IPR025724GAG-pre-integrase domain
PfamPF077271.4E-24343409IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
PROSITE profilePS5011411.793652688IPR000679Zinc finger, GATA-type
SMARTSM004018.4E-17652706IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.24E-14654715No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14656690IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.74E-13657706No hitNo description
PROSITE patternPS003440658683IPR000679Zinc finger, GATA-type
PfamPF003202.8E-15658692IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MVHKVDRMVK VLQGLSMEWH KDQAYGMVVS DDRQKSISSN AGILGSSPAI ESQGIDIDMY  60
AKDGPSRFKK NYGVQCDFCK IKGHTKDVCY KLIGYPADYQ FKKRAPNSGY GSGANAHNVI  120
VDNVSQEPNR KSGYADVEFL DKAIMSKLDS TKRMHLPTGG QTEVSHIGSR TISTRSTLSN  180
VLYLPAFKYN FLYVSKVTRE LGCSVSFFSD FCIFQDLSSG KVREIGREVN ELYMLSRRTQ  240
GGHTTNNCLL AIKDESKFKC PNEVELWHKR FGHPSVEVLE KMLSSKTEVV VSAVDKCPNE  300
VIEVQSSETS IPQAIANEIV PISAEIRRWV KAMKLEIEAL QNNHTWNLVS LPTGKKPIRC  360
RWIYKVKYKA NSEVERFKAR LVAKGYSQQE GIDYQETFSP IVKIKTVSVE GALKSSFMPE  420
RPLKMTQNQA SGDDLSAAGA GQNVVSGDDF FVDDLLDFSN GFVEGEGEEE QGEEDNSVQK  480
TCSVSISASP QEKPEIDDTI SVKEDFASLP VSEISVPTDD LDSLEWLSHF VEDSFSGYSL  540
AYPVGKLPVE KQSGDGEIPV QEKKSCFATP VQTKARTKRG RTSVRVWPSG SGGSLTESSS  600
SSTSSSSTTT MSSSPTTPWF LYPTPVHTAE SPGKPLAKKL KKKPAAQGGS GPQQPRRCSH  660
CGIQKTPQWR AGPMGAKTLC NACGVRYKSG RLLPEYRPAC SPTFSNELHS NNHRKVLEMR  720
RKKESEATGL APPVQSF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-65GATA transcription factor 5