|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sme2.5_01071.1_g00003.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
Family |
WRKY |
Protein Properties |
Length: 297aa MW: 33636.6 Da PI: 6.9532 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_01071.1_g00003.1 | genome | EGD | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 101.2 | 6.3e-32 | 141 | 199 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
+D ++WrKYGqK++kgs++pr+YY+C+++ gC ++k+ver+++dp+++++tY+geHnh+
Sme2.5_01071.1_g00003.1 141 SDMWSWRKYGQKPIKGSPYPRGYYKCSTSkGCLARKQVERNRSDPNMFIVTYTGEHNHP 199
79************************9988****************************8 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010150 | Biological Process | leaf senescence |
GO:0010200 | Biological Process | response to chitin |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 297 aa
Download sequence Send
to blast |
MEDDWDLHAV VRSCTTTTSS AISFNNFPST THNNDDSLFS FQHLVDKPRI LLNTNTTELR 60 KPFITHQTLL SPISVLPPLQ DLPAPSQQQQ QQHDVHHLSN MKLIQHKKPL TCTLHPQTPR 120 NKRRKNQLKK VCQVAADGLS SDMWSWRKYG QKPIKGSPYP RGYYKCSTSK GCLARKQVER 180 NRSDPNMFIV TYTGEHNHPM PTHRNSSGIA RQKTTKPTTS SPAPENEEIS RDEKEDFFED 240 DDDEFGLDKM EPDDDFFDGL DELKIPATGD SLPEKFPPTL QLPWLVNNAA TTAAGGS
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | HG975449 | 3e-61 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |