PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01046.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 130aa    MW: 14837.4 Da    PI: 5.1035
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01046.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF32.21.3e-10246145
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                             k ie++  r v+fskR+ +++  A+   +   aev v++fs++gk
  Sme2.5_01046.1_g00012.1  2 KLIESEKARAVSFSKRKSTLFEQANKFATQAKAEVGVMLFSPSGK 46
                             569****************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-7153IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.72E-17180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.255154IPR002100Transcription factor, MADS-box
PfamPF003192.3E-14450IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MKLIESEKAR AVSFSKRKST LFEQANKFAT QAKAEVGVML FSPSGKPCSY GSTSIETIID  60
KFFKMKLEDR QRDHAEGKSI GFEELEDLRK ELEALKQXXQ ALEETRNAIM AEYLKFDLNV  120
VLEPEEKESS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158947.11e-50PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DHK13e-49M1DHK1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000891596e-50(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.13e-16AGAMOUS-like 29