PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01046.1_g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 106aa MW: 12240.9 Da PI: 5.3147 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.1 | 2.3e-08 | 3 | 46 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 i ++ r v++skR+++++ Ae L a+v +++fs++ k Sme2.5_01046.1_g00006.1 3 LIASEEDRVVSLSKRKKTLFQQAEKLANTARADVGIMLFSPSEK 46 5889999*********************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.227 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-13 | 1 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-10 | 4 | 50 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
MKLIASEEDR VVSLSKRKKT LFQQAEKLAN TARADVGIML FSPSEKSCSY GSISIETIVD 60 KYFDVKLEDR QRDYPEVKSD GWAELEDLHK ELEAWKEKEK KSNINV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015158947.1 | 4e-38 | PREDICTED: agamous-like MADS-box protein AGL29 | ||||
TrEMBL | M1DHK1 | 9e-37 | M1DHK1_SOLTU; Uncharacterized protein | ||||
TrEMBL | M1DZV6 | 9e-37 | M1DZV6_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400089159 | 1e-37 | (Solanum tuberosum) | ||||
STRING | PGSC0003DMT400097081 | 1e-37 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1780 | 12 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-12 | AGAMOUS-like 61 |