PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01046.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family M-type_MADS
Protein Properties Length: 106aa    MW: 12240.9 Da    PI: 5.3147
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01046.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.12.3e-08346245
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              i ++  r v++skR+++++  Ae L     a+v +++fs++ k
  Sme2.5_01046.1_g00006.1  3 LIASEEDRVVSLSKRKKTLFQQAEKLANTARADVGIMLFSPSEK 46
                             5889999*********************************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.227154IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-13182IPR002100Transcription factor, MADS-box
PfamPF003194.9E-10450IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MKLIASEEDR VVSLSKRKKT LFQQAEKLAN TARADVGIML FSPSEKSCSY GSISIETIVD  60
KYFDVKLEDR QRDYPEVKSD GWAELEDLHK ELEAWKEKEK KSNINV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015158947.14e-38PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLM1DHK19e-37M1DHK1_SOLTU; Uncharacterized protein
TrEMBLM1DZV69e-37M1DZV6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000891591e-37(Solanum tuberosum)
STRINGPGSC0003DMT4000970811e-37(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17801260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-12AGAMOUS-like 61