PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01033.1_g00007.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 118aa    MW: 13893.9 Da    PI: 9.2505
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01033.1_g00007.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.9e-193182556
                             SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             ++++ eq+ +Le+ Fe  +++  +++ +LA+ lgL+ rqV +WFqNrRa++k
  Sme2.5_01033.1_g00007.1 31 RRLNMEQVMTLEKNFELGNKLEVDRKMQLARALGLQPRQVAIWFQNRRARWK 82
                             57899**********************************************9 PP
2HD-ZIP_I/II121.25.3e-3929118291
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              k rrl+ eqv +LE++Fe  +kLe +rK++lar+Lglqprqva+WFqnrRAR+ktk+lEkdy +Lkr+++a+k+en++L++++++L
  Sme2.5_01033.1_g00007.1  29 KIRRLNMEQVMTLEKNFELGNKLEVDRKMQLARALGLQPRQVAIWFQNRRARWKTKKLEKDYGVLKREFNAIKAENDALQAQNNKL 114
                              669*********************************************************************************** PP

              HD-ZIP_I/II  88 reel 91 
                              ++e+
  Sme2.5_01033.1_g00007.1 115 HAEV 118
                              9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.9532484IPR001356Homeobox domain
SuperFamilySSF466891.67E-192785IPR009057Homeodomain-like
SMARTSM003897.3E-172788IPR001356Homeobox domain
CDDcd000862.13E-132885No hitNo description
PfamPF000465.1E-163182IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-193291IPR009057Homeodomain-like
PRINTSPR000312.5E-65564IPR000047Helix-turn-helix motif
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PRINTSPR000312.5E-66480IPR000047Helix-turn-helix motif
PfamPF021831.5E-1284118IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MSFSTKCDDQ EDVLCDDRTQ DEAILGEKKI RRLNMEQVMT LEKNFELGNK LEVDRKMQLA  60
RALGLQPRQV AIWFQNRRAR WKTKKLEKDY GVLKREFNAI KAENDALQAQ NNKLHAEV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-117HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006363937.12e-61PREDICTED: homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC036e-48ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLM0ZJU93e-60M0ZJU9_SOLTU; Uncharacterized protein
TrEMBLM0ZJV02e-60M0ZJV0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000022594e-61(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-50HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]