 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sme2.5_01029.1_g00008.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
| Family |
HSF |
| Protein Properties |
Length: 357aa MW: 40642.6 Da PI: 8.0182 |
| Description |
HSF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_01029.1_g00008.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HSF_DNA-bind | 114.9 | 4.9e-36 | 25 | 117 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87
Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ Fk
Sme2.5_01029.1_g00008.1 25 FLTKTYQLVDDPSTDHIVSWGEDDSTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFK 101
9*****************************************************************99.........********* PP
XXXXXXXXXXXXXXXX CS
HSF_DNA-bind 88 kgkkellekikrkkse 103
+g+k+ll++i+r+k++
Sme2.5_01029.1_g00008.1 102 RGEKHLLCEIHRRKTA 117
*************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008356 | Biological Process | asymmetric cell division |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042802 | Molecular Function | identical protein binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 357 aa
Download sequence Send
to blast |
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPSTDH IVSWGEDDST FVVWRPPEFA 60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE IHRRKTAQPV 120
QSVPLNHHHS FTGPGFFPNY PSNYNRLSIS PPDSDEQLFQ QLQQQQQNIN WCDSPSSNNN 180
ANINTNTNAN TVTALSEDND RLRRSNNMLM SELAHMRKLY NDIIYFVQNH VKPVAPSSSY 240
NLSSLLPASA TPIVQKNMFG YQQITNPKNV LMCNNNINNN VVSPSKTSQS SSVTILDEGG 300
DNRSTKLFGV PLMSKKRVHP EYSSYYSTTN MVESNKARLM VLEKNDLGLN LMPPSSS
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 2ldu_A | 2e-22 | 21 | 117 | 17 | 123 | Heat shock factor protein 1 |
| 5d5u_B | 2e-22 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
| 5d5v_B | 2e-22 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
| 5d5v_D | 2e-22 | 21 | 116 | 26 | 131 | Heat shock factor protein 1 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975443 | 1e-106 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
