![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_01016.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 161aa MW: 18008.6 Da PI: 10.8361 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 32 | 1.5e-10 | 11 | 59 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ri n+ r vtfs+Rr+g++K eE+ ++ ++a ++fs+t + y+y Sme2.5_01016.1_g00002.1 11 ERITNEKSRMVTFSRRRKGLFKINEEVESKTGSRIASVVFSPTERPYTY 59 69*********************************************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.241 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.1E-11 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 5.18E-15 | 4 | 60 | No hit | No description |
SuperFamily | SSF55455 | 1.31E-13 | 4 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-8 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.0E-16 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.0E-8 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50920 | 11.357 | 34 | 140 | IPR018108 | Mitochondrial substrate/solute carrier |
PRINTS | PR00404 | 4.0E-8 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00153 | 1.1E-8 | 72 | 143 | IPR018108 | Mitochondrial substrate/solute carrier |
SuperFamily | SSF103506 | 3.53E-8 | 101 | 144 | IPR023395 | Mitochondrial carrier domain |
Gene3D | G3DSA:1.50.40.10 | 8.1E-9 | 102 | 145 | IPR023395 | Mitochondrial carrier domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
MGTGKKKIPI ERITNEKSRM VTFSRRRKGL FKINEEVESK TGSRIASVVF SPTERPYTYG 60 DVDFAIQKHF CRTKLSTSGM KSHQSNSDVV VTGGSRSSST PSIVARDGIV GLYRGFVPSA 120 VKTLPSSSIR LTTFDAVKRL IARSEEEYQK IIEESRRQKA E |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016582225.1 | 6e-33 | PREDICTED: agamous-like MADS-box protein AGL61 | ||||
TrEMBL | A0A2G2YZ40 | 1e-32 | A0A2G2YZ40_CAPAN; Uncharacterized protein | ||||
STRING | XP_009796162.1 | 1e-29 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 3e-13 | AGAMOUS-like 61 |