PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_01013.1_g00005.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HSF
Protein Properties Length: 403aa    MW: 46036.2 Da    PI: 4.963
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_01013.1_g00005.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.8e-35141052102
                              HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXX CS
             HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFk 87 
                              F+ k+ye+++d++++ ++sws+n++sf+v+++ +fa+++Lp+yFkh+nf+SF+RQLn+YgFkk++ e+         weF+++ F 
  Sme2.5_01013.1_g00005.1  14 FIAKIYEMVDDPSTDPIVSWSSNNKSFIVHNPPDFARDLLPRYFKHNNFSSFIRQLNTYGFKKIHPEQ---------WEFANEDFL 90 
                              9***************************************************************9998.........********* PP

                              XXXXXXXXXXXXXXX CS
             HSF_DNA-bind  88 kgkkellekikrkks 102
                              +g+ +ll++i r+k 
  Sme2.5_01013.1_g00005.1  91 RGQPHLLKNIYRRKP 105
                              ************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.0E-38898IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.2E-5910103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.9E-3511103IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.0E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.2E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.0E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDEAPCSTNV LPPFIAKIYE MVDDPSTDPI VSWSSNNKSF IVHNPPDFAR DLLPRYFKHN  60
NFSSFIRQLN TYGFKKIHPE QWEFANEDFL RGQPHLLKNI YRRKPVHSHS AQNLHSVSSS  120
ALTESERQGY KEDIEKLKHE NELLHLELHR HKQDHQELET QLQVLTKRVQ QVKDRQMNVL  180
STLARTINKP GLALSLMPQL EMNERKRRLP GNSLRYNDTG LEDNQVSSSE DLTRENMDPT  240
SLLTLNKEVL DQLESSLTFW EYTLCDIDLA EMRRSSSMDL DESISCADSP AISYPQLTVD  300
VGSKVSDIDV NSEPNGNATP DVTPTDNRVG TASNNVPTGV NDVFWEQFLT ENPGSTDVKP  360
EREDTESKIN ESKTVENGKF WWNRKTVNSL TEQLGHLTPA EGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-251110326129Heat shock factor protein 1
5d5v_B7e-251110326129Heat shock factor protein 1
5d5v_D7e-251110326129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1203208ERKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0146190.0BT014619.1 Lycopersicon esculentum clone 134122F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168157.10.0PREDICTED: heat stress transcription factor A-4a-like
RefseqXP_015168158.10.0PREDICTED: heat stress transcription factor A-4a-like
TrEMBLM1CNW00.0M1CNW0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000714870.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34482344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.14e-97heat shock transcription factor A4A