PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sme2.5_01006.1_g00006.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

NF-YB

Protein Properties

Length: 1094aa MW: 125013 Da PI: 9.2028

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_01006.1_g00006.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	165.9	5.4e-52	26	118	2	94
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87 reqdr+lPian++rimkk+lP+n+ki+kd+k+tvqecvsefisf+tseasdkcq+ekrkting+dll alatlGfedy+eplkvyl Sme2.5_01006.1_g00006.1 26 REQDRYLPIANIGRIMKKALPSNGKIAKDSKDTVQECVSEFISFITSEASDKCQKEKRKTINGEDLLSALATLGFEDYIEPLKVYL 111 89********************************************************************************** PP NF-YB 88 kkyrele 94 ++yre + Sme2.5_01006.1_g00006.1 112 TRYREGD 118 **965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	2.8E-49	22	121	IPR009072	Histone-fold
SuperFamily	SSF47113	3.57E-36	28	121	IPR009072	Histone-fold
Pfam	PF00808	1.7E-26	31	95	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.5E-18	59	77	No hit	No description
PROSITE pattern	PS00685	0	62	78	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.5E-18	78	96	No hit	No description
PRINTS	PR00615	1.5E-18	97	115	No hit	No description
SuperFamily	SSF56672	2.05E-8	610	811	No hit	No description
CDD	cd01650	2.35E-32	622	802	No hit	No description
Pfam	PF00078	1.8E-25	628	803	IPR000477	Reverse transcriptase domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1094 aa Download sequence Send to blast
MAEPASPGGG GSHESGGDPS PQSNLREQDR YLPIANIGRI MKKALPSNGK IAKDSKDTVQ 60 ECVSEFISFI TSEASDKCQK EKRKTINGED LLSALATLGF EDYIEPLKVY LTRYREGDAK 120 GSARVGDASV RKDIVGSQLG SSTQLSPYES AFFLIPAFRF LMDKFIYFAV GFKSFDIERC 180 LGATSLWYEW TERSKNAITR ARFNKGYMEW IVKILKEASQ TIGNSVHRWR RIEDFSEIFC 240 ARNYNKYGRY ISPISVRGRR RAVLIIPELT FNAGWTDIAE KVTRFISSHK LGKSPVITKT 300 IDEGVSYAEM LTKAVIGDGG RRSSFTQKVF ENNLPVNEVR SDKYQEKGTS HFMHGIYLMG 360 TLCNFTKLIR RKGRLIIRMG TSQPRDCQNH FEKVASTTTT SHSGEREEEL QLQQVLQPNP 420 VNIQVPDDSI ELERKAPSWE TKINKETEKV AFNIWPNRWM RCGFKEADGS KGGILLMWDS 480 RVWRGTKIEE GQYSITYNFV NLQEPFSWSF TGVYAPHNRM EKLVCWEELA AMRGALRRSD 540 DSLVQNWWDG FQVEGCPDYK LCTKLKLLKQ KLKSWNRENN AAMANRKSSL LDELAELDKA 600 QEDRDLTQEE LMKGMFEKAF NATFVALIPK KPGAVEVKDF RPISLIGGVY KIISKLLTER 660 LISVIGKLVD EHQMAFLKGR QILDAVLLAN ELVDSRTRQT KPRIMCKLDI EKAYDHVNWN 720 FLIKILKDMS FGSRWIKWIS YCISTVRFSL IINGNTEGLN QMIKIAKANK WVRGFSAVTG 780 RGEELEISHL FYADDALIFC DAEPDQEAMG TFGCSVWKTI RKLWVCSNKN ISINVGDGLK 840 IDFWNEVWVG EDSLKDSFPQ LYSISLQREA TVAQVWSPQG WDLTFRSGLN DWEIEEVARL 900 LEVLHSHSGL SLRPDTLRWK IQRKGVFSVK SCYWKSNTLQ TRPEEAEKND HLFLHCKSAK 960 NLWDMFLAIL GVNWVMPGAT MELLSSWKGI GSRDREDHWW KTIPASLIPK KKGAIELRYY 1020 MPISLIGSIY KICKDLAGRF KKVIEKLVSI QQNAFIQGRQ ITYASFVANE VLDWQQKHGN 1080 AGLSCKLDTE KAFD

Sequence ? help Back to Top

Protein Sequence Length: 1094 aa Download sequence Send to blast

MAEPASPGGG GSHESGGDPS PQSNLREQDR YLPIANIGRI MKKALPSNGK IAKDSKDTVQ  60
ECVSEFISFI TSEASDKCQK EKRKTINGED LLSALATLGF EDYIEPLKVY LTRYREGDAK  120
GSARVGDASV RKDIVGSQLG SSTQLSPYES AFFLIPAFRF LMDKFIYFAV GFKSFDIERC  180
LGATSLWYEW TERSKNAITR ARFNKGYMEW IVKILKEASQ TIGNSVHRWR RIEDFSEIFC  240
ARNYNKYGRY ISPISVRGRR RAVLIIPELT FNAGWTDIAE KVTRFISSHK LGKSPVITKT  300
IDEGVSYAEM LTKAVIGDGG RRSSFTQKVF ENNLPVNEVR SDKYQEKGTS HFMHGIYLMG  360
TLCNFTKLIR RKGRLIIRMG TSQPRDCQNH FEKVASTTTT SHSGEREEEL QLQQVLQPNP  420
VNIQVPDDSI ELERKAPSWE TKINKETEKV AFNIWPNRWM RCGFKEADGS KGGILLMWDS  480
RVWRGTKIEE GQYSITYNFV NLQEPFSWSF TGVYAPHNRM EKLVCWEELA AMRGALRRSD  540
DSLVQNWWDG FQVEGCPDYK LCTKLKLLKQ KLKSWNRENN AAMANRKSSL LDELAELDKA  600
QEDRDLTQEE LMKGMFEKAF NATFVALIPK KPGAVEVKDF RPISLIGGVY KIISKLLTER  660
LISVIGKLVD EHQMAFLKGR QILDAVLLAN ELVDSRTRQT KPRIMCKLDI EKAYDHVNWN  720
FLIKILKDMS FGSRWIKWIS YCISTVRFSL IINGNTEGLN QMIKIAKANK WVRGFSAVTG  780
RGEELEISHL FYADDALIFC DAEPDQEAMG TFGCSVWKTI RKLWVCSNKN ISINVGDGLK  840
IDFWNEVWVG EDSLKDSFPQ LYSISLQREA TVAQVWSPQG WDLTFRSGLN DWEIEEVARL  900
LEVLHSHSGL SLRPDTLRWK IQRKGVFSVK SCYWKSNTLQ TRPEEAEKND HLFLHCKSAK  960
NLWDMFLAIL GVNWVMPGAT MELLSSWKGI GSRDREDHWW KTIPASLIPK KKGAIELRYY  1020
MPISLIGSIY KICKDLAGRF KKVIEKLVSI QQNAFIQGRQ ITYASFVANE VLDWQQKHGN  1080
AGLSCKLDTE KAFD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-41	24	116	1	93	NF-YB
4awl_B	2e-41	24	116	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-41	24	116	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU457806	7e-87	CU457806.5 S.lycopersicum DNA sequence from clone SL_MboI-28J22 on chromosome 4, complete sequence.
GenBank	HG975443	7e-87	HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBank	HG975516	7e-87	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38880.7	6e-57	nuclear factor Y, subunit B1