PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_01004.1_g00008.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 174aa MW: 19849.6 Da PI: 9.0371 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33.1 | 7.2e-11 | 14 | 53 | 4 | 43 |
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +nk+ + sk ++ ++K A LS+LC++++a+iifs + Sme2.5_01004.1_g00008.1 14 KNKRAETAKISKMQKSLFKRADQLSILCGIQIAIIIFSVD 53 677777888999*************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 11.437 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.76E-13 | 8 | 82 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-9 | 15 | 55 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MESQSSNVDL ALTKNKRAET AKISKMQKSL FKRADQLSIL CGIQIAIIIF SVDRQPILFG 60 KPDVESVVHQ FREASDLTAP RFYMKMKKKD GENKEREKSI EDDNTQRLSG DFESPYLESL 120 LNLHRQLKDF EDQLIKETDL TQLNQEIKKH KDSKSVSKMN VASSSTLPTN MASP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004248432.1 | 7e-66 | agamous-like MADS-box protein AGL62 | ||||
Refseq | XP_015169511.1 | 1e-65 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3Q7IDE0 | 2e-64 | A0A3Q7IDE0_SOLLC; Uncharacterized protein | ||||
TrEMBL | M1BPI5 | 3e-64 | M1BPI5_SOLTU; Uncharacterized protein | ||||
STRING | Solyc10g012200.1.1 | 3e-65 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400049904 | 4e-65 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2297 | 12 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-11 | AGAMOUS-like 62 |