PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00974.1_g00006.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C3H
Protein Properties Length: 324aa    MW: 36149.8 Da    PI: 8.0122
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00974.1_g00006.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.52e-07118137626
                              -SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                              C++f++ G+Ck Gd C +aHg
  Sme2.5_00974.1_g00006.1 118 CPDFRK-GQCKKGDACEYAHG 137
                              ******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.4E-5112138IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.056113139IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4118139IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5118137IPR000571Zinc finger, CCCH-type
SMARTSM0035616147170IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.155147171IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MMMIGRSPPT VQIPPWNVMD DPTVDVYSPF SGTSPDSAAL KALQRYLPSN ANDAIFDSDG  60
LDIPVDAFSC DNFRMYEFKV RKCARGRSHD WTECPYAHPG EKARRRDPRK YHYSGTSCPD  120
FRKGQCKKGD ACEYAHGVFE CWLHPARYRT QPCKDGTHCR RRVCFFAHTP EQLRVLPQNS  180
PRSHAESCDS FDGSPSRLGF ESFSTSPPFD SPPMTPRGVN GLAESMRNMQ IGMARGGMRA  240
MQMGSPGFGS PRSPSILRPG FMSLPTTPTR SGLSVFDQNC EEEPAMERVE SGRDLRARIY  300
AKLSIENSLD SGAPDVGWVS ELLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016537589.10.0PREDICTED: zinc finger CCCH domain-containing protein 20-like
SwissprotQ9M0G21e-121C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A1U8E1G00.0A0A1U8E1G0_CAPAN; Zinc finger CCCH domain-containing protein 20
TrEMBLA0A2G2YWW00.0A0A2G2YWW0_CAPAN; zinc finger CCCH domain-containing protein 20-like
STRINGPGSC0003DMT4000654630.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-107C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]