![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sme2.5_00968.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 355aa MW: 39664 Da PI: 8.7112 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 134.8 | 7.6e-42 | 132 | 294 | 3 | 133 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................... 65 kdrhski T++g+RdRR+Rls++ a++fF Lqd LGfdk+skt+eWLl+++kpai eltg Sme2.5_00968.1_g00004.1 132 SNKDRHSKINTARGPRDRRMRLSLDAARKFFHLQDLLGFDKASKTVEWLLNKSKPAIEELTGKgnegprhpdankqisgstttgig 217 579***********************************************************************999999999998 PP TCP 66 ....ssssasec.....eaesssssasnsssgkaaksaakskksqksaasalnlakesrakarararertrekmrik 133 s+s +++c ++e+sss ++++++++++++++k+ s+++ a+ + kesr++arararert+ k++ + Sme2.5_00968.1_g00004.1 218 aicaSNSISESCevisgTDETSSSDKNKETAKEEKRKKKKKTASTARRAELEPPTKESRNQARARARERTKTKKMSQ 294 88874444456777763333333333333333555555588888888888999999************999987655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-45 | 132 | 293 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.961 | 133 | 191 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.583 | 273 | 290 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 355 aa Download sequence Send to blast |
MYPPSNNNCD YSAILSSLIS QNIPASPCMQ YEHELYFQSY HNDDLYNYFQ QQPLPFIEDL 60 SVHNLLADSC TETVAKPLNC TDNVIITSNH VLEGVDEGGG GEGRGGNKGE DVMSCRNSFI 120 RGRISKNNKR SSNKDRHSKI NTARGPRDRR MRLSLDAARK FFHLQDLLGF DKASKTVEWL 180 LNKSKPAIEE LTGKGNEGPR HPDANKQISG STTTGIGAIC ASNSISESCE VISGTDETSS 240 SDKNKETAKE EKRKKKKKTA STARRAELEP PTKESRNQAR ARARERTKTK KMSQIGKSKA 300 LAHDLNPSRS RRPINEVCEE PGTHEQLSFH QENNVDESNL VVNGNWNPFS IFSYN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 251 | 257 | KRKKKKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001275622.1 | 1e-167 | TCP transcription factor BRC1b | ||||
TrEMBL | F6KB96 | 1e-166 | F6KB96_SOLTU; BRANCHED1B | ||||
STRING | Solyc06g069240.1.1 | 1e-164 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68800.1 | 1e-24 | TCP domain protein 12 |