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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00924.1_g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRF | ||||||||
Protein Properties | Length: 576aa MW: 62582.4 Da PI: 8.1737 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 77.2 | 1.7e-24 | 184 | 228 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Sme2.5_00924.1_g00005.1 184 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 228 79****************************************985 PP | |||||||
2 | QLQ | 61.8 | 1.8e-21 | 116 | 152 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKy+ an+P+Pp+Ll +i+k Sme2.5_00924.1_g00005.1 116 GPFTPSQWMELEHQALIYKYITANVPIPPYLLNPIRK 152 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.4E-12 | 116 | 152 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.516 | 117 | 152 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.8E-16 | 117 | 151 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.663 | 184 | 228 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.8E-21 | 185 | 227 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MFVASAETKQ KWYGSGGFNK HERPSVNEDE WDKDKKLPKT TDDFSSSKPT MLFQQLPISH 60 ETQQMLSFST PNSQNHVTMA YYNQHPSSAF ARNSSGYGSG ALNTGNMHGL IAGVKGPFTP 120 SQWMELEHQA LIYKYITANV PIPPYLLNPI RKALESAGFS TFPGLRSNVL GWGAFHLGFS 180 NSNDPEPGRC RRTDGKKWRC SRDAVADQKY CERHMNRGRH RSRKPVEGQT PNSASGNNTG 240 AATTSAKLTN MSSAASTALV SGGGVAASNS LNLSHHNQLC NLQPAVTNLS TTSPYLERSY 300 AAKENFGERH SDTKGPSNVS PSVKEGQYSM QKEQTLYGLT SRAEFGLVCA DSLINPLNKN 360 SSLVNCRSYG NSDDISDQES KSQHHPLRQF MDDWPKNQSG QPNVSWTDID LQSDPTQLSI 420 SIPLVTSDFM SSTSSPANDK LTASPHRSRE HEATQMGLGI GTIISEHNQR QGSWIPISWE 480 SSLGGPLGEV LHSTNSSLGD CKNKSALNLM TEGWDRSPCM VSSPTGVLQK SSFGSLSNSS 540 AGSSPRAENS KMTNEGSSLC NGLLVTTLMN PTLPAM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ997852 | 0.0 | FJ997852.1 Capsicum annuum UPA17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004238069.1 | 0.0 | growth-regulating factor 1-like isoform X2 | ||||
TrEMBL | A0A3Q7G8H8 | 0.0 | A0A3Q7G8H8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g077510.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1688 | 23 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22840.1 | 4e-91 | growth-regulating factor 1 |