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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00912.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ZF-HD | ||||||||
Protein Properties | Length: 87aa MW: 9755.83 Da PI: 8.2887 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.1 | 7.6e-32 | 23 | 77 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY eC+kNhAas+Gg++vDGC+E+mp+ ++t+ +l+CaACgCHRnFHRreve+e Sme2.5_00912.1_g00003.1 23 RVRYVECQKNHAASVGGYVVDGCREYMPE---DTTSGTLNCAACGCHRNFHRREVETE 77 79**************************8...66789*****************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 1.0E-21 | 19 | 87 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.4E-27 | 24 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-25 | 25 | 74 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 23.183 | 26 | 73 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 87 aa Download sequence Send to blast |
MKKVLRRNDS SRNCTNSSFT VRRVRYVECQ KNHAASVGGY VVDGCREYMP EDTTSGTLNC 60 AACGCHRNFH RREVETEVAS DCTSTTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Inhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. {ECO:0000269|PubMed:21455630}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC122544 | 2e-81 | AC122544.1 Genomic sequence for Lycopersicon esculentum, clone L136C6, complete sequence. | |||
GenBank | AC226507 | 2e-81 | AC226507.1 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0136C06, complete sequence. | |||
GenBank | AM261628 | 2e-81 | AM261628.1 Solanum lycopersicum mRNA for mini zinc finger protein (ima gene). | |||
GenBank | EU161283 | 2e-81 | EU161283.1 Solanum lycopersicum clone BAC L136C6 transcription factor style2.1 gene, complete cds. | |||
GenBank | HG975441 | 2e-81 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. | |||
GenBank | HG975514 | 2e-81 | HG975514.1 Solanum lycopersicum chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234189.1 | 1e-51 | mini zinc finger protein | ||||
Swissprot | Q9LJW5 | 4e-28 | MIF2_ARATH; Mini zinc finger protein 2 | ||||
TrEMBL | A0A2G2V060 | 4e-50 | A0A2G2V060_CAPBA; Mini zinc finger protein 1 | ||||
TrEMBL | A0A2G3ACA2 | 4e-50 | A0A2G3ACA2_CAPAN; Mini zinc finger protein 1 | ||||
TrEMBL | A0A2G3D9P7 | 4e-50 | A0A2G3D9P7_CAPCH; Mini zinc finger protein 1 | ||||
TrEMBL | A0ZXL1 | 3e-50 | A0ZXL1_SOLLC; Mini zinc finger protein | ||||
STRING | Solyc02g087970.1.1 | 6e-51 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1105 | 24 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 1e-30 | mini zinc finger 2 |
Publications ? help Back to Top | |||
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