PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sme2.5_00909.1_g00008.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

M-type_MADS

Protein Properties

Length: 162aa MW: 18672.2 Da PI: 6.804

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00909.1_g00008.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33.2	6.8e-11	13	56	1	44
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 +ri+nks +vtf kR++ ++ +ELS+LC+ + a i+f+++ Sme2.5_00909.1_g00008.1 13 ERIQNKSHLEVTFFKRLEDLFTEDNELSILCAGQSATIVFAPNT 56 69**************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	13.316	5	55	IPR002100	Transcription factor, MADS-box
SMART	SM00432	0.0079	5	67	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.29E-12	6	84	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-6	7	27	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	6.5E-10	14	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-6	27	42	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.3E-6	42	63	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MVKPSARKRT RTERIQNKSH LEVTFFKRLE DLFTEDNELS ILCAGQSATI VFAPNTHNNK 60 TIVYSLGHPS VNSVVDKFLG LNISPETNDD VVANPHVEKL NEVKRLLEEE EDRAKMLDEK 120 INARGSFEEL NSVQLGELIE KFKFMMEKVK ERIAHQQQKH NI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA204	24	223

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	6e-16	AGAMOUS-like 62