PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00900.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 702aa MW: 77311 Da PI: 4.5437 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 150 | 1.1e-46 | 25 | 152 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWk 84 l+pGfrFhPtd el+++yLk+k+ gkkl + e i+e++iyk+ PwdLp k ++k+++ ewyfF++r++kya+g r nrat+sgyWk Sme2.5_00900.1_g00003.1 25 LAPGFRFHPTDVELIMYYLKRKIMGKKLLF-EGITELNIYKYSPWDLPdKcCYKSKDLEWYFFCPRERKYASGARMNRATESGYWK 109 579************************888.78***************6545666777**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +tgkd+ v+ +++ vg ktLvf+ g+ p+g++tdWv+hey++ Sme2.5_00900.1_g00003.1 110 TTGKDRFVTY-DERIVGSVKTLVFHLGHPPRGQRTDWVIHEYKF 152 *********9.999****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-54 | 16 | 188 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 52.113 | 25 | 188 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-24 | 27 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
MSVGSSKKHQ FFVWSAFLFM NLRRLAPGFR FHPTDVELIM YYLKRKIMGK KLLFEGITEL 60 NIYKYSPWDL PDKCCYKSKD LEWYFFCPRE RKYASGARMN RATESGYWKT TGKDRFVTYD 120 ERIVGSVKTL VFHLGHPPRG QRTDWVIHEY KFEDKESIDA GFAQHCWPPP KELLGSKDSH 180 VLCKVFQKSG PGPRNGAQYG APFKEEDWED DEYPAEPCTS DVFPVPPERP DNRSNSNVTR 240 VVDPGSTSDW PSSEQSPSLI QPSIQEMPLD EPDGAELPGQ PNQIDDESVP GESKSSNIFS 300 ALPILPVKQS CSVVNSMVNP GSGPSNGQMC TNEVALDEQD DEINCLLAQF TEDTTLLPGG 360 NETNQKKLEN FNQDVNAPAA TFTDGNDIFD GLGDIEFWAG VGQPGPDLSA SGGSNYSLNP 420 MILPQDAAYM ELNDLDIPLN HSAETIGTGQ LVPGHLCMPY SSNNGMHQLC FGSNSLGIVQ 480 DFSEHHLPLL PEHYTRQVNH SDMVYNFQDN SSQGCNAETS FSVSSYKEPE ESRLDNQNLE 540 RGVQQQKFYL SIFALCDGSF ILVKAEVTLG VDGCTDDALS VVRGEQTTLY SSIFALCGGS 600 FILVKAEVTL GVDGCTYDAL SVILGEQRKL YSSIFALYGG SILVKAEVTL GVCGCTNEAF 660 AVSLGSTCLK CIIVMIPNPI FLSGVGVWAK VVALLPPLGK VG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-42 | 25 | 152 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT013683 | 0.0 | BT013683.1 Lycopersicon esculentum clone 132505F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165757.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like isoform X1 | ||||
Refseq | XP_015165758.1 | 0.0 | PREDICTED: NAC domain-containing protein 82-like isoform X1 | ||||
TrEMBL | A0A1U8EWF0 | 0.0 | A0A1U8EWF0_CAPAN; NAC domain-containing protein 16 | ||||
TrEMBL | A0A2G2Y785 | 0.0 | A0A2G2Y785_CAPAN; NAC domain-containing protein 82-like isoform X1 | ||||
STRING | Solyc11g005920.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6050 | 23 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09330.4 | 5e-79 | NAC domain containing protein 82 |