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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00896.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 19075.9 Da PI: 10.6106 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00034 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H ++H Sme2.5_00896.1_g00004.1 47 FECKTCNKRFPSFQALGGHRSSH 69 89**********99999999988 PP | |||||||
2 | zf-C2H2 | 12.9 | 0.00034 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++Cg Fs L H+r+H Sme2.5_00896.1_g00004.1 90 HKCTICGVEFSLGQALGGHMRRH 112 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.41E-8 | 47 | 112 | No hit | No description |
Pfam | PF13912 | 2.9E-12 | 47 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.93 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.097 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.0E-4 | 84 | 115 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 1.2E-9 | 90 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.993 | 90 | 117 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.095 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0071289 | Biological Process | cellular response to nickel ion | ||||
GO:2000280 | Biological Process | regulation of root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MSAPKRSRED DRQVEAEAMA NCALIALLSR FNNTSSSSSD HHHVNDFECK TCNKRFPSFQ 60 ALGGHRSSHN KRPKLLGEFL VQTKKKNKMH KCTICGVEFS LGQALGGHMR RHRNEINKTS 120 KMIPVLTKSN SNKRIFCLDL NLTPRDDNVD FKLWPTTPVA SPVLRIFI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363363.1 | 1e-106 | PREDICTED: zinc finger protein ZAT11-like | ||||
TrEMBL | M1B9D7 | 1e-105 | M1B9D7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040143 | 1e-105 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 5e-36 | C2H2 family protein |