PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00896.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | C2H2 | ||||||||
Protein Properties | Length: 166aa MW: 18739.4 Da PI: 9.9865 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00054 | 45 | 67 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k Fs+ L H +H Sme2.5_00896.1_g00003.1 45 FECKTCNKYFSSFQALGGHRASH 67 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 15.2 | 6.3e-05 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++Cg+ Fs L H+r+H Sme2.5_00896.1_g00003.1 88 HKCTICGMEFSLGQALGGHMRRH 110 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.61E-9 | 45 | 110 | No hit | No description |
PROSITE profile | PS50157 | 10.263 | 45 | 72 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-10 | 45 | 67 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.31 | 45 | 67 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 47 | 67 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.5E-4 | 83 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 8.1E-10 | 87 | 113 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.492 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.037 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MTSMKRSRED DGQVEVEAMA NGALMLLSRF NNTSSSSDHH HVNDFECKTC NKYFSSFQAL 60 GGHRASHNNR PKLLGEFLAQ TNKKSKVHKC TICGMEFSLG QALGGHMRRH RDESNKTSKM 120 IPILTKSNSN KRIFCLDLNL TPRDDNVDFK LWPTAPVASP VLRIFI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006363363.1 | 1e-108 | PREDICTED: zinc finger protein ZAT11-like | ||||
TrEMBL | M1B9D7 | 1e-107 | M1B9D7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400040143 | 1e-107 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 6e-36 | C2H2 family protein |