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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00861.1_g00004.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NF-YC | ||||||||
Protein Properties | Length: 245aa MW: 27530.1 Da PI: 5.9485 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 127.5 | 4.9e-40 | 49 | 152 | 1 | 101 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav 83 ql++ w++q i++ ++fknh+lP++r+kki+k+d dv+m+s eaP ll+kacelfi elt+r+ l+a e krrtlkk+d ++v Sme2.5_00861.1_g00004.1 49 QLQVLWASQcdeIQQISNFKNHKLPISRMKKIMKSDRDVRMVSGEAPFLLAKACELFISELTFRASLQASEYKRRTLKKTDFMDVV 134 799****998889999********************************************************************** PP NF-YC 84 trtdifdflvdivprdel 101 ++t+ifdflvd+ de+ Sme2.5_00861.1_g00004.1 135 KQTEIFDFLVDVFSGDEI 152 ***********9987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.02E-25 | 28 | 143 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.4E-17 | 71 | 130 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.5E-26 | 72 | 146 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MRSPPTTSSI TPWQTNLTNQ QPKQRRLEAT TVQSSGDPDR HLNQHWQDQL QVLWASQCDE 60 IQQISNFKNH KLPISRMKKI MKSDRDVRMV SGEAPFLLAK ACELFISELT FRASLQASEY 120 KRRTLKKTDF MDVVKQTEIF DFLVDVFSGD EIEEEASGLW PGMGGSTSGV PYPYPPMEPP 180 APPMGQPAPL MGQPDPSGVV VPSHAMPWVP HSRYIHPSLQ AWEFLLQTDE DNPSATGGNS 240 RQGNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 9e-31 | 56 | 146 | 2 | 92 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006351458.1 | 2e-64 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_015165982.1 | 2e-64 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_015165983.1 | 2e-64 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_015165984.1 | 2e-64 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_015165985.1 | 2e-64 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_015165986.1 | 2e-64 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_015165987.1 | 2e-64 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_015165988.1 | 2e-64 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9SMP0 | 2e-51 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A3Q7H1D8 | 6e-61 | A0A3Q7H1D8_SOLLC; Uncharacterized protein | ||||
TrEMBL | Q2VY18 | 6e-61 | Q2VY18_SOLLC; CONSTANS interacting protein 2a | ||||
STRING | Solyc06g072040.1.1 | 9e-62 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4087 | 21 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 2e-44 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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