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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00835.1_g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | LBD | ||||||||
Protein Properties | Length: 229aa MW: 25261.8 Da PI: 9.4591 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 83.1 | 4.1e-26 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C+++C + p++ p++q++++ +++k++G++ +l+l++a p++ r+++++sl+yeA+ r+ +P+yG+++ + Sme2.5_00835.1_g00019.1 4 SCNGCRVLRKGCNEKCSIKPCLqwiqsPEAQSNATLFLAKFYGRAGLLNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSTAARR 89 6************************************************************************************* PP DUF260 82 klqqqleqlkaelallke 99 +l+ + +l+ + al+ + Sme2.5_00835.1_g00019.1 90 SLSFRPTRLRMQRALRSK 107 ******999999888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 14.944 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.5E-20 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MRLSCNGCRV LRKGCNEKCS IKPCLQWIQS PEAQSNATLF LAKFYGRAGL LNLINAGPDH 60 LRPAIFRSLL YEACGRIVNP IYGSTAARRS LSFRPTRLRM QRALRSKHVT FATCPRKTTP 120 MPICTRLRRE PGSSGFSSKP QPRKQSPDVN DAARVMWSWC HKEEEEAVGS PSLNSGLSQQ 180 RTEEPSREGE SGDADSGSVE TVEASVVKVD ESSDVGLELT LGLLPLIRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235815.1 | 1e-110 | LOB domain-containing protein 40 | ||||
TrEMBL | A0A3Q7FWA6 | 1e-109 | A0A3Q7FWA6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g119530.2.1 | 1e-110 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA886 | 24 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-54 | LOB domain-containing protein 41 |