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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sme2.5_00835.1_g00013.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family |
M-type_MADS |
Protein Properties |
Length: 189aa MW: 21849.1 Da PI: 7.5061 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00835.1_g00013.1 | genome | EGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 36.5 | 6.3e-12 | 2 | 46 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
k ie++ r v+fskR+ +++K A+ + aev v++fs++gk
Sme2.5_00835.1_g00013.1 2 KLIESEKARAVSFSKRKSTLFKQANKFATQAKAEVGVMLFSPSGK 46
569****************************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 189 aa
Download sequence Send
to blast |
MKLIESEKAR AVSFSKRKST LFKQANKFAT QAKAEVGVML FSPSGKPCSY GSTSVETIID 60 KFFKMKLENR QQCSYGSTSI ETIIDKFFKM KLEDRQRDHA EGKSNGFEEL EDLRKELEAL 120 KENEKKRILM YKIMHPGSEI PKDKHVEEQK LAIKLRVEEA LEETRNAIMA EYLQFDLNVV 180 LEPEEKESS
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 113 | 126 | RKELEALKENEKKR |