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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Sme2.5_00789.1_g00012.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family | S1Fa-like | ||||||||
| Protein Properties | Length: 86aa MW: 9648.45 Da PI: 10.3062 | ||||||||
| Description | S1Fa-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | S1FA | 127.1 | 5.2e-40 | 20 | 86 | 4 | 70 |
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70
ve+kG+nPG++vl++vggl+l+fl+gny+ly+yaqk+lPP+kkkP+skkk+k+e+lkqGv++PGe
Sme2.5_00789.1_g00012.1 20 RDVEVKGFNPGVLVLILVGGLVLTFLIGNYLLYMYAQKTLPPKKKKPISKKKMKKERLKQGVSAPGE 86
579***************************************************************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| ProDom | PD019013 | 0.01 | 21 | 86 | No hit | No description |
| Pfam | PF04689 | 8.9E-39 | 22 | 86 | IPR006779 | DNA binding protein S1FA |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 86 aa Download sequence Send to blast |
MDFEDHDSPP SFDNVKNMAR DVEVKGFNPG VLVLILVGGL VLTFLIGNYL LYMYAQKTLP 60 PKKKKPISKK KMKKERLKQG VSAPGE |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009627553.1 | 3e-32 | PREDICTED: DNA-binding protein S1FA-like | ||||
| Refseq | XP_009781429.1 | 3e-32 | PREDICTED: DNA-binding protein S1FA-like | ||||
| Refseq | XP_016432997.1 | 3e-32 | PREDICTED: DNA-binding protein S1FA-like | ||||
| Refseq | XP_016471310.1 | 3e-32 | PREDICTED: DNA-binding protein S1FA-like | ||||
| Swissprot | Q42337 | 2e-14 | S1FA2_ARATH; DNA-binding protein S1FA2 | ||||
| TrEMBL | A0A1S3WZD4 | 6e-31 | A0A1S3WZD4_TOBAC; DNA-binding protein S1FA-like | ||||
| TrEMBL | A0A1S4A3X3 | 6e-31 | A0A1S4A3X3_TOBAC; DNA-binding protein S1FA-like | ||||
| TrEMBL | A0A1U7X3I1 | 6e-31 | A0A1U7X3I1_NICSY; DNA-binding protein S1FA-like | ||||
| STRING | XP_009781429.1 | 1e-31 | (Nicotiana sylvestris) | ||||
| STRING | XP_009627553.1 | 1e-31 | (Nicotiana tomentosiformis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA3174 | 22 | 49 |
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