PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00780.1_g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | TALE | ||||||||
Protein Properties | Length: 705aa MW: 77079.8 Da PI: 6.7763 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 1.9e-09 | 402 | 439 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Sme2.5_00780.1_g00002.1 402 FEHflHPYPKDSDKMMLAKQTGLTRSQVSNWFINARVR 439 554459******************************88 PP | |||||||
2 | BELL | 114.6 | 5e-37 | 266 | 337 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakLl++l+eV++rY++y++q+qtvi e++ag+gsak Yt+lAl++iS++FrcLkdai++qi Sme2.5_00780.1_g00002.1 266 ERQEIQMKKAKLLNMLDEVEQRYRHYHHQMQTVIRWLEQAAGIGSAKTYTALALQTISKQFRCLKDAIIGQI 337 79*********************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.6E-51 | 175 | 335 | IPR006563 | POX domain |
Pfam | PF07526 | 1.7E-47 | 182 | 333 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.147 | 380 | 443 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.98E-12 | 383 | 444 | No hit | No description |
SMART | SM00389 | 9.7E-10 | 383 | 447 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-17 | 384 | 449 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 386 | 449 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.8E-18 | 400 | 439 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009610 | Biological Process | response to symbiotic fungus | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010197 | Biological Process | polar nucleus fusion | ||||
GO:0010201 | Biological Process | response to continuous far red light stimulus by the high-irradiance response system | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 705 aa Download sequence Send to blast |
MASYFHGNSE IQGGNDGLQT LILMNPSYVG FSETQQQPPG GGSSNNIIFF NSNPHAPPPP 60 PPSQQFVGVP LATTAFTAPS QAAGNTTNNN NNNEESISAL HGFLGRSSQY GFYNPANDIT 120 AAREMTRAHH QHQQQGLSLS LSSSQQSGFG NFTAAREIVS SPTASASGVV LQQQIQSFNM 180 PLSSKYLKAA QELLDEVVNV GKSMKTISNN STELVNDDVK KSKNMATTMT DMDGNELDRG 240 ENSSKHDSGG GGGGGGGTAA ELSTAERQEI QMKKAKLLNM LDEVEQRYRH YHHQMQTVIR 300 WLEQAAGIGS AKTYTALALQ TISKQFRCLK DAIIGQIRSA SQTLGEEDSL GGKIEGSRLK 360 FVDNQLRQQR ALQQLGMIQH NAWRPQRGLP ERAVSVLRAW LFEHFLHPYP KDSDKMMLAK 420 QTGLTRSQVS NWFINARVRL WKPMVEEMYL EEIKEHEQNG SDQAKTSKLG EQNEDSTTSR 480 SIAPQEKSPG SDSQNKSFVS NQTSPMPVSN ATSLSPIGMS IRNQSAGFNL IGSPEIESIN 540 ITQGSPKKPR SNEMLHSPNS VSVPSINMDV KPNEEQMSMK FGDDRQDRDG FSLMGGPMNF 600 MGGFGAYPIG EIARFSTEQF STPYSTSGTV SLTLGLPHNE NLSMSATHHS FLPIPTQNIQ 660 IGEANHEFGS LNTPTSAHST TNVYENFNIQ NRKRFAAPLL PDFVA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-16 | 389 | 447 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-16 | 389 | 447 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 247 | 257 | SGGGGGGGGGT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU686385 | 0.0 | EU686385.1 Solanum etuberosum BEL29 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006348466.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_006348467.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Refseq | XP_015164720.1 | 0.0 | PREDICTED: BEL1-like homeodomain protein 1 | ||||
Swissprot | Q9SJ56 | 1e-151 | BLH1_ARATH; BEL1-like homeodomain protein 1 | ||||
TrEMBL | M1BX38 | 0.0 | M1BX38_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400054945 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1478 | 24 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-129 | BEL1-like homeodomain 1 |
Publications ? help Back to Top | |||
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