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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00747.1_g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | NAC | ||||||||
Protein Properties | Length: 635aa MW: 70535.6 Da PI: 5.0004 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.9 | 1.6e-52 | 28 | 156 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 lp+G+rF+Ptdeelv++yL+ k++g + ++ +vi+evdi+k+ePwdLp + v+++++ew+fF+++d+ky++g+r nrat++gyWk Sme2.5_00747.1_g00003.1 28 LPVGYRFRPTDEELVNHYLRLKINGADGQV-SVIREVDICKLEPWDLPdlSVVESHDNEWFFFCPKDRKYQNGQRLNRATERGYWK 112 799************************999.89**************96448888999**************************** PP NAM 85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 atgkd+++++kkg+++g+kktLv+y grap+g++t+Wv+heyr+ Sme2.5_00747.1_g00003.1 113 ATGKDRNIVTKKGAKIGMKKTLVYYIGRAPEGKRTHWVIHEYRA 156 ******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-58 | 23 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.39 | 28 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-26 | 29 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0070417 | Biological Process | cellular response to cold | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MMAVLPGENP IAVHPVDKQM GLPPLHSLPV GYRFRPTDEE LVNHYLRLKI NGADGQVSVI 60 REVDICKLEP WDLPDLSVVE SHDNEWFFFC PKDRKYQNGQ RLNRATERGY WKATGKDRNI 120 VTKKGAKIGM KKTLVYYIGR APEGKRTHWV IHEYRATEKS LDGSQPGQGA FVLCRLFRKS 180 DLKQDEHVEN SNLDAAQNTS VAKSPTEDEL SEAATPLTVI QPISDCDHSN SAKFSKGKVN 240 GKQIPLESHS NSCIADDTED QMLDITSIPP VQNLEKELGN LCDPSSQPLD WKIFSPLHSQ 300 MQVELGSSYL QAPLNNDICG YPKDVQFQYG TNAHEINDFL DSILINSDEF SCEDSGQEFL 360 SHHIDTKNYS ITGPMFKDTG SCSESEAEVT QRLVEPDFFD PEVLWDNFDR EAAVKREASS 420 LEGTVLQMYS APGAPYVSND HAVGSLGFPE STYSGHYDYP PSFDGSKVPD FPKVAQSGVC 480 NNMVSSESAS GTGIKLRTRQ MHNQPDDMQS KPQGTAPRRI RLQKKLQAGP VECRKRTDSS 540 QGAERLQGEK ASDEHISTTS DTTHEEFEGV NGEADDLSTR VKDADDSPVQ ESLDVSLKTG 600 TKLSSSSRVY LSKVVVVASL LVVFIGVWGC FRLYV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-44 | 27 | 184 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-44 | 27 | 184 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-44 | 27 | 184 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-44 | 27 | 184 | 16 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-44 | 27 | 184 | 19 | 173 | NAC domain-containing protein 19 |
3swm_B | 3e-44 | 27 | 184 | 19 | 173 | NAC domain-containing protein 19 |
3swm_C | 3e-44 | 27 | 184 | 19 | 173 | NAC domain-containing protein 19 |
3swm_D | 3e-44 | 27 | 184 | 19 | 173 | NAC domain-containing protein 19 |
3swp_A | 3e-44 | 27 | 184 | 19 | 173 | NAC domain-containing protein 19 |
3swp_B | 3e-44 | 27 | 184 | 19 | 173 | NAC domain-containing protein 19 |
3swp_C | 3e-44 | 27 | 184 | 19 | 173 | NAC domain-containing protein 19 |
3swp_D | 3e-44 | 27 | 184 | 19 | 173 | NAC domain-containing protein 19 |
4dul_A | 2e-44 | 27 | 184 | 16 | 170 | NAC domain-containing protein 19 |
4dul_B | 2e-44 | 27 | 184 | 16 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00398 | DAP | Transfer from AT3G49530 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF437522 | 0.0 | KF437522.1 Solanum tuberosum putative membrane bound NAC transcription factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001274765.1 | 0.0 | uncharacterized LOC102593794 | ||||
TrEMBL | A0A0V0IMV4 | 0.0 | A0A0V0IMV4_SOLCH; Putative nam-like protein 1-like | ||||
STRING | PGSC0003DMT400001498 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3363 | 24 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49530.1 | 3e-86 | NAC domain containing protein 62 |