 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sme2.5_00735.1_g00008.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
Family |
bHLH |
Protein Properties |
Length: 267aa MW: 30314.9 Da PI: 6.6755 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00735.1_g00008.1 | genome | EGD | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 37.3 | 5e-12 | 89 | 141 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
++ +h e+Er+RR+++ + ++ Lr+ lP + ++K s ++ +A +YI +Lq
Sme2.5_00735.1_g00008.1 89 KKLMHREIERQRRQEMSTLYASLRQKLPLeN---IKGKRSTSDHILEAANYIEQLQ 141
5789*************************66...*********************9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MFPLQQDDDA NDSHRQLPFP LSQPYTNPSN FIFQQDLLTD FAPFDSLDLG DNNLTFNYNN 60 NDNNNNNKDQ RGNRLGNSSV VSTDDNKQKK LMHREIERQR RQEMSTLYAS LRQKLPLENI 120 KGKRSTSDHI LEAANYIEQL QKNVKNLEER REKLKKESIG LSNIPRSGSS TASDSSPAAI 180 VMVKECLDGM EILVNCGLNN EGFRLSRVLQ VLFQEGLTIV NCSCAKINNT TVLHTIRTEV 240 SSYQPRINVD VIQQKLADTI HDNAGFK
|
Nucleic Localization
Signal ? help
Back to Top |
 |
No. |
Start |
End |
Sequence |
1 | 149 | 156 | RREKLKKE |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC211020 | 4e-39 | AC211020.2 Solanum lycopersicum chromosome 6 clone C06HBa0003K02, complete sequence. |
GenBank | HG975518 | 4e-39 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |