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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00726.1_g00016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | G2-like | ||||||||
Protein Properties | Length: 600aa MW: 66537.3 Da PI: 5.1911 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.8 | 5.8e-34 | 249 | 303 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav++LGGse+AtPk +l++mkv+gLt++hvkSHLQkYR+ Sme2.5_00726.1_g00016.1 249 KQRMRWTPELHEAFVEAVNKLGGSERATPKGVLKMMKVEGLTIYHVKSHLQKYRT 303 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.736 | 246 | 306 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.88E-18 | 247 | 303 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.7E-31 | 248 | 305 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.7E-25 | 249 | 303 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-10 | 251 | 302 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.1E-25 | 487 | 534 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 600 aa Download sequence Send to blast |
MEARPAVSVQ NVVASQLSNC GASGALSSSM SIFPTALGEK YPKFPDLQQA SMEKELKQHP 60 GTVVSSLPSN SGAVGLMFSS SSGFSADLHS SSVSSQEKHS GPAPFISQST YSETSMLLPH 120 SGVLQPTASS EYLNEHEPWC IDPLPNFLDY PMNTPVQNSQ VACSNRQSDW QGWADLVIND 180 EDDLTSNWND IMADTSIGNS EMKMQDQEEK HPLNFPMQQV QASQPIPAVP VETSAIAPVS 240 SPASSAATKQ RMRWTPELHE AFVEAVNKLG GSERATPKGV LKMMKVEGLT IYHVKSHLQK 300 YRTARYKPEA LEGSSEKKQS SLDDLSSLDL KTINSLPQAA VSLYRLVSIE NLPVFSSSTK 360 ITDYQIWWKG QLEFPVIRGW PTVIPESPLH RHLLFLFLAL LDSPFSMLIF DMLSTTSEEL 420 RLASMVALVM IWSGFGDRNF RCWFCGLGHG SDKDFGTLIF SVLVDNVFRL CECLNLVGFG 480 CRHRRGIEIT EALRLQMEVQ KRLHEQLEIQ RNLQLRIEEQ GRYLQMMFEK QCKSMPGADL 540 TKGSSSSTAD DAFAQLSQVD AAKEVDEKQK ERETEVLGAP ETNITSTSDS PPLKRSKLDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-32 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-32 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-32 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-32 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-32 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-32 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-32 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-32 | 249 | 307 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015088022.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_015088023.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_015088024.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_015088025.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_015088026.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
Refseq | XP_015088028.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1-like isoform X1 | ||||
TrEMBL | A0A1U7WMW6 | 0.0 | A0A1U7WMW6_NICSY; protein PHR1-LIKE 1-like isoform X1 | ||||
STRING | Solyc09g072830.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2753 | 23 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 1e-51 | phosphate starvation response 1 |