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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00713.1_g00012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | ERF | ||||||||
Protein Properties | Length: 396aa MW: 43038.9 Da PI: 9.0009 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.9 | 1.7e-20 | 182 | 231 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g Sme2.5_00713.1_g00012.1 182 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 231 7********.**********7.....337*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 25.712 | 182 | 239 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.8E-33 | 182 | 240 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-22 | 182 | 240 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.4E-14 | 182 | 231 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-37 | 182 | 245 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-11 | 183 | 194 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.83E-15 | 190 | 241 | No hit | No description |
PRINTS | PR00367 | 1.0E-11 | 205 | 221 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MYLLKVANSR KSSEYVSFTD TEYTATATTA AAVEGGGGQP YGRSQFFEGG DYSMFTGYSQ 60 TGEMSAMVTA LTHVVSGQKY RPDSSGTGIC YSPSSAYSSS SSGSRAGQKR RSRDQEEFRS 120 GWPYSSVKTE EATSIVEPSN TTISTITTIP AITTTTTITA TSATTTTATG SSEERTGEGR 180 RRYRGVRQRP WGKWAAEIRD PHKAARVWLG TFDTAEAAAR AYDEAALRFR GNRAKLNFPE 240 NVRLLSPQIQ NLTRLTTTTA SPQFIAPVTQ PTPIFHQQQS SDMARDYWEY SQLLQNPGDF 300 FDQQPSTLLE QMFVASSMAL LNSNTLPSSS SSSSSSSSSL ASSTSYPLLY SSYYMPQNNQ 360 IQGTNTSSGT TTNSSNNGSN FSTQFRSTSS QYPPSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-23 | 181 | 242 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF547979 | 1e-147 | KF547979.1 Solanum melongena cultivar Pusa Uttam ethylene responsive factor 83 mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361609.1 | 1e-124 | PREDICTED: ethylene-responsive transcription factor ERF110-like isoform X1 | ||||
TrEMBL | A0A0V0IMG0 | 1e-124 | A0A0V0IMG0_SOLCH; Putative ethylene-responsive transcription factor ABR1-like | ||||
STRING | PGSC0003DMT400048407 | 1e-123 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4322 | 21 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 4e-17 | ethylene response factor 110 |