|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sme2.5_00708.1_g00006.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
|
Family |
WRKY |
Protein Properties |
Length: 222aa MW: 25719.8 Da PI: 7.8805 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sme2.5_00708.1_g00006.1 | genome | EGD | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 25.5 | 2.6e-08 | 93 | 139 | 17 | 59 |
T-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
WRKY 17 gsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59
g r YYrCt++ +C ++k+v+ +e+p + ++tY g+H+++
Sme2.5_00708.1_g00006.1 93 GCYKRRCYYRCTHKydqDCGATKQVQIIQENPIImYHTTYFGNHTCN 139
556679*******99999***********99975168********97 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 222 aa
Download sequence Send
to blast |
MEDHPHKRVI KQLVEGKRFA IQLQSLLKQD YDKSISADEL IVKIWGSFTQ AISELNTLGN 60 CKTTLAHNQI EEVDKPDRSS SELKKKEKQD RRGCYKRRCY YRCTHKYDQD CGATKQVQII 120 QENPIIMYHT TYFGNHTCNS SKIPKHKHNS QFKPRSDSTV LKEESKGQSD NVSSIVDSNL 180 WQDFMPSSPS AHDSTLAPHK SSYFEMEDYF GKFVDIETIE FS
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | KM062182 | 8e-80 | KM062182.1 Solanum habrochaites cultivar EC520061 WRKY transcription factor mRNA, complete cds. |