PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Sme2.5_00694.1_g00015.1

Organism

Solanum melongena

Taxonomic ID

4111

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 159aa MW: 18279.7 Da PI: 7.7611

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sme2.5_00694.1_g00015.1	genome	EGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133	1.2e-41	8	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqq 85 +CaaCk++rrkC+++Cvlapyfpa+qpkkf+n+h+lFG++n++k+l++l++e+ + dam+s++ye+++r + PvyG+v+ i+ l+q Sme2.5_00694.1_g00015.1 8 SCAACKYQRRKCTPQCVLAPYFPANQPKKFQNAHRLFGVRNIVKTLEKLEDEDqKADAMKSIIYESDMREKFPVYGCVECIFYLNQ 93 6**********************************************776659*************************** PP DUF260 86 qleqlkaelallkee 100 ql+ +k+el+++ ++ Sme2.5_00694.1_g00015.1 94 QLDDTKQELEYVYAQ 108 *******998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.726	7	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-39	8	105	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MTGMSRVSCA ACKYQRRKCT PQCVLAPYFP ANQPKKFQNA HRLFGVRNIV KTLEKLEDED 60 QKADAMKSII YESDMREKFP VYGCVECIFY LNQQLDDTKQ ELEYVYAQLD MYRQQRSTES 120 YVGNGMLRVP LFSNTEGESS NQGATYPISH LSASSNQNQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	9e-30	2	112	5	114	LOB family transfactor Ramosa2.1
5ly0_B	9e-30	2	112	5	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016562288.1	2e-73	PREDICTED: LOB domain-containing protein 27-like
Swissprot	Q9STS6	4e-36	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A2G3AC68	6e-73	A0A2G3AC68_CAPAN; LOB domain-containing protein 27
STRING	XP_009795991.1	5e-63	(Nicotiana sylvestris)
STRING	PGSC0003DMT400089200	8e-64	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-38	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]