PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00694.1_g00015.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 159aa    MW: 18279.7 Da    PI: 7.7611
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00694.1_g00015.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601331.2e-4181081100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqq 85 
                              +CaaCk++rrkC+++Cvlapyfpa+qpkkf+n+h+lFG++n++k+l++l++e+ + dam+s++ye+++r + PvyG+v+ i+ l+q
  Sme2.5_00694.1_g00015.1   8 SCAACKYQRRKCTPQCVLAPYFPANQPKKFQNAHRLFGVRNIVKTLEKLEDEDqKADAMKSIIYESDMREKFPVYGCVECIFYLNQ 93 
                              6************************************************776659******************************* PP

                   DUF260  86 qleqlkaelallkee 100
                              ql+ +k+el+++ ++
  Sme2.5_00694.1_g00015.1  94 QLDDTKQELEYVYAQ 108
                              *********998766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.7267109IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-398105IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MTGMSRVSCA ACKYQRRKCT PQCVLAPYFP ANQPKKFQNA HRLFGVRNIV KTLEKLEDED  60
QKADAMKSII YESDMREKFP VYGCVECIFY LNQQLDDTKQ ELEYVYAQLD MYRQQRSTES  120
YVGNGMLRVP LFSNTEGESS NQGATYPISH LSASSNQNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-3021125114LOB family transfactor Ramosa2.1
5ly0_B9e-3021125114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016562288.12e-73PREDICTED: LOB domain-containing protein 27-like
SwissprotQ9STS64e-36LBD27_ARATH; LOB domain-containing protein 27
TrEMBLA0A2G3AC686e-73A0A2G3AC68_CAPAN; LOB domain-containing protein 27
STRINGXP_009795991.15e-63(Nicotiana sylvestris)
STRINGPGSC0003DMT4000892008e-64(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-38LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]