PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00661.1_g00012.1
Organism
Solanum melongena
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRF
Protein Properties Length: 375aa    MW: 41266.8 Da    PI: 7.5014
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00661.1_g00012.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC75.26.8e-24116159144
                      WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                              d+ep+rC+RtDGKkWRCsr+v +++k+CErH h+++ rsrk++e
  Sme2.5_00661.1_g00012.1 116 DPEPWRCKRTDGKKWRCSRDVAPDQKYCERHAHKSKPRSRKPVE 159
                              79***************************************987 PP
2QLQ36.81.2e-136295235
                      QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35
                             +FTa+Qlq++ +Q  + Ky++a++PvPp+Ll+++
  Sme2.5_00661.1_g00012.1 62 PFTASQLQEFQRQSVICKYIMASMPVPPQLLLPL 95
                             9*******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.3E-46197IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166617.5116297IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.3E-106295IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.911116160IPR014977WRC domain
PfamPF088792.7E-19117159IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MENSELLDLK MKSSEAYKRS MFMAPSSFSP CGKETSDDGG SGSFVGAALS SRACARGKAQ  60
APFTASQLQE FQRQSVICKY IMASMPVPPQ LLLPLPTHPS PPQSNSLDLK FSSGSDPEPW  120
RCKRTDGKKW RCSRDVAPDQ KYCERHAHKS KPRSRKPVEI HTNRHPPPPK SNSNHHSFHF  180
PTVQLSADQT RCIEWLGRAD RSGTIPHQQL MQSSSGMGFN NDQNTRNSPA FQVQDEYPMN  240
FNQYMSNSTS GDDSLQARGT TRDLMDAWPK DRLITNNGSF TSLTLSMSGW NRGMDDDNEH  300
TIGMLDSETS GDEVLRSQWL NPVSWMSSTA PGGPLGEALC LGNASSLPSP HGYSNSSATR  360
SCSFGSCENA LDFIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092614e-86AP009261.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0005L01, complete sequence.
GenBankAP0092804e-86AP009280.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0201M14, complete sequence.
GenBankHG9755204e-86HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343776.10.0PREDICTED: growth-regulating factor 8-like
TrEMBLM1AWF80.0M1AWF8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000318930.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125171820
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.15e-28growth-regulating factor 8