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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sme2.5_00650.1_g00014.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
SRS |
| Protein Properties |
Length: 221aa MW: 24986.7 Da PI: 8.7318 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00650.1_g00014.1 | genome | EGD | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 176 | 1.8e-54 | 16 | 156 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalss 88
+ +Cqd GnqakkdC+++RCRtCCksrgf+C+thvkstWvp++ rr r++ ++ ++ +++++ ++a +++kr +++
Sme2.5_00650.1_g00014.1 16 SSNRCQDYGNQAKKDCTYMRCRTCCKSRGFQCETHVKSTWVPVSIRRPRHHLHHHINTIQQQQQqHQAGPNSKRY-------RSNE 94
5679********************************************977666654433332202222222221.......1222 PP
DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+++ e ++P ev +avfrc+rvss+d+ +++aYqt+v+i+GhvfkGiLydqG+++
Sme2.5_00650.1_g00014.1 95 SQV----IGDDQEGGDFPGEVCFPAVFRCIRVSSIDNVVDQYAYQTSVKIAGHVFKGILYDQGADH 156
222....223346778***********************************************998 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 221 aa
Download sequence Send
to blast |
MMRRREEDGG ISSSSSSNRC QDYGNQAKKD CTYMRCRTCC KSRGFQCETH VKSTWVPVSI 60
RRPRHHLHHH INTIQQQQQQ HQAGPNSKRY RSNESQVIGD DQEGGDFPGE VCFPAVFRCI 120
RVSSIDNVVD QYAYQTSVKI AGHVFKGILY DQGADHESPR YNHNNMVGES SSRVFQLQQP 180
SNLPTTATTT TSPPPPSSTY PNLFSAFSMP GTQFFQYPKS S
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
