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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sme2.5_00641.1_g00007.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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| Family |
NAC |
| Protein Properties |
Length: 350aa MW: 39410 Da PI: 7.4956 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sme2.5_00641.1_g00007.1 | genome | EGD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 168.6 | 2e-52 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86
lppGfrF Ptdeel+v+yL++kv+g++++l ++i+evd+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkat
Sme2.5_00641.1_g00007.1 14 LPPGFRFYPTDEELLVQYLCRKVAGDDFSL-QIIAEVDLYKFNPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKAT 98
79***************************9.89***************7777799******************************* PP
NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
g+dk ++s +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
Sme2.5_00641.1_g00007.1 99 GTDKVITS-EGRKVGIKKALVFYIGKAPKGTKTNWIMHEYRL 139
*******9.999****************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MGVRETDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGDD FSLQIIAEVD LYKFNPWVLP 60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKVITSEGRK VGIKKALVFY 120
IGKAPKGTKT NWIMHEYRLS VPTTKSGSSS RLDDWVLCRI YKKNCPVQKA CSSDMQSKEM 180
SHGSSSSSSS QFDSMLEPLP EDRYFSLPTR NFQQDDNKLN LQQPSSENFD WATWGGFNSF 240
PELTTGNQAP AQVNQTPMLV NINQNHNNNN NMNNFTEFFA NPTALNFHGE VKFEGGVDQE 300
VESSVRAQRM NSVNPGFFPE NSTGFSHASS VPDPFGIRYP TQTVNMGFSG
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-105 | 1 | 169 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-105 | 1 | 169 | 4 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-105 | 1 | 169 | 4 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
