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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sme2.5_00632.1_g00022.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
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Family | GRAS | ||||||||
Protein Properties | Length: 632aa MW: 71697.9 Da PI: 6.2803 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 364.9 | 1.1e-111 | 253 | 624 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 l+ lL++cA+a++s d + a++lL r++e++sp+gd ++Rla+y+++AL+arl+++++ ly a+++s+ s ++ l+a+k++ Sme2.5_00632.1_g00022.1 253 LRALLTQCAQAMASYDSRTANELLMRIREHSSPHGDGTERLAHYLANALEARLSGTGTALYTAFASSRIS---AANILKAYKTYIT 335 5789**********************************************************99999998...999********** PP GRAS 87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAe 170 ++P+ +s++ aN+ I + ++g+ ++HiiD++i +G+QWp+L+q L+ Rp+gpp+lRiTg++ p++g +e++e tg+rL+k+++ Sme2.5_00632.1_g00022.1 336 ACPFRLLSNIFANKYIRKLIAGAPKIHIIDIGILYGFQWPCLIQGLSMRPGGPPELRITGIDLPQPGfkPAERVEDTGRRLEKYCK 421 ******************************************************************999***************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 +++vpf f++ +ak++e+++++eL+++++E+l+Vn+ ++l +++de+v +s+rd+vL+l+++++P+++++ + n++ F++r Sme2.5_00632.1_g00022.1 422 RFHVPFVFKA-IAKKWESITIDELEIQKDEVLVVNSLYRLGNIPDETVVPNSPRDAVLNLIRRIRPDMFIHGVLNGTFNTPFFVTR 506 **********.7************************************************************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 f eal ++s+lfd++ea++pre+e+r+ E+e+++r+++nv+aceg+er+er et+++W+ r +aGFk++pl+++++k ++ +r Sme2.5_00632.1_g00022.1 507 FREALFHFSSLFDMFEATIPREDEDRKLFEEEVFARDAMNVIACEGTERVERPETFKQWQLRCVRAGFKQLPLDQEIVKIVRNKVR 592 ************************************************************************************** PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + ++v+e+ +++++gWk+r +++S+W+ Sme2.5_00632.1_g00022.1 593 SEYHKDFSVDEDGNWMLQGWKGRVTYALSCWK 624 *99888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.399 | 227 | 604 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-109 | 253 | 624 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MDPSTIFNNH PSFDEDYLSN LVIGDGDADA DQEGEKDYSD AMYKFLNQML MEEDDLENKP 60 CMFHDCMALQ ATEKYFSDVL HGSENIKSPQ SVIINPSSYL SSNSPDSIES PQWDLNFESP 120 LSTMTSSNHD SFFASFGNDQ FEEATANVFQ SGSSSNSPTG LREKKNHHRG DAAADQQRSN 180 KQQATFTHDE SEPLEMYDNV LLCLNNPYVE HRNATSVTSC SPPNEAKKAT KVRRPKGGRT 240 HGSSIVKREI VDLRALLTQC AQAMASYDSR TANELLMRIR EHSSPHGDGT ERLAHYLANA 300 LEARLSGTGT ALYTAFASSR ISAANILKAY KTYITACPFR LLSNIFANKY IRKLIAGAPK 360 IHIIDIGILY GFQWPCLIQG LSMRPGGPPE LRITGIDLPQ PGFKPAERVE DTGRRLEKYC 420 KRFHVPFVFK AIAKKWESIT IDELEIQKDE VLVVNSLYRL GNIPDETVVP NSPRDAVLNL 480 IRRIRPDMFI HGVLNGTFNT PFFVTRFREA LFHFSSLFDM FEATIPREDE DRKLFEEEVF 540 ARDAMNVIAC EGTERVERPE TFKQWQLRCV RAGFKQLPLD QEIVKIVRNK VRSEYHKDFS 600 VDEDGNWMLQ GWKGRVTYAL SCWKPAKQSV KF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 2e-44 | 259 | 625 | 25 | 380 | Protein SCARECROW |
5b3h_A | 2e-44 | 259 | 625 | 24 | 379 | Protein SCARECROW |
5b3h_D | 2e-44 | 259 | 625 | 24 | 379 | Protein SCARECROW |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015058087.1 | 0.0 | scarecrow-like protein 11 isoform X2 | ||||
TrEMBL | Q00LP5 | 0.0 | Q00LP5_SOLLC; GRAS4 | ||||
STRING | Solyc01g100200.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA276 | 24 | 191 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |